TkA05G451790 | RubberDandelionOmics

Gene overview

TkA05G451790

Reference: TK1151 Chr: Chr05 Coordinates: 113057956-113064601 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1326 bp · TkA05G451790|TK1151|cDNA

TTGGACAACGGGAGAGCGTTCCCTCAACGGCTTTATAAAACTCAAACCTTCTCTTCTTACTCTTCATTTGAAACCCTCTTTGATTCAGACAATTTTGAGAGAGAGAAAATGGAGTCCACGAAGACAGCAATGGAGGCTTTCGAGAAGCTAGAGAAGGTTGGAGAAGGAACCTATGGCAAAGTGTACAGAGCGAGAGACAGAGCCACCGGCAAAATCGTCGCTCTTAAGAAAACCAGGCTTCACGAAGACGAAGAAGGCGT...

CDS

Download CDS FASTA

1038 bp · TkA05G451790|TK1151|CDS

TTGGACAACGGGAGAGCGTTCCCTCAACGGCTTTATAAAACTCAAACCTTCTCTTCTTACTCTTCATTTGAAACCCTCTTTGATTCAGACAATTTTGAGAGAGAGAAAATGGAGTCCACGAAGACAGCAATGGAGGCTTTCGAGAAGCTAGAGAAGGTTGGAGAAGGAACCTATGGCAAAGTGTACAGAGCGAGAGACAGAGCCACCGGCAAAATCGTCGCTCTTAAGAAAACCAGGCTTCACGAAGACGAAGAAGGCGT...

Protein

Download Protein FASTA

345 aa · TkA05G451790|TK1151|PROTEIN

LDNGRAFPQRLYKTQTFSSYSSFETLFDSDNFEREKMESTKTAMEAFEKLEKVGEGTYGKVYRARDRATGKIVALKKTRLHEDEEGVPPTTLREISILRMLSRDPHVVKLMDVKQGINKSGNTVLYLVFEYMETDLKKFIRSYRQSGENIPPQVVKSLMYQLCKGVAFCHAHGVLHRDLKPHNLLMDKKSLMLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGATHYSTAVDIWSVGCIFAELVMKTAIFAGDSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G451790`
TK1151 ID	TkA05G451790
OH-1004 ID	LXL04_010696
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	52.700
Protein coverage (%)	TK1151 86.087 / OH-1004 89.231 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G451790

Location Chr05:113057956-113064601 (+)

Description Similar to CDC2A: Cell division control protein 2 homolog A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g20930`	Cyclin-dependent kinase B2-2.	No verified direct reference in this release
`At1g76540`	Cyclin-dependent kinase B2-1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0512600`	Forms a complex with CYCB2-1 or CYCB2-2 that activates CDK kinase in tobacco BY2 cells during G2/M (mitosis) phases.	No verified direct reference in this release
`Os01g0897000`	Cyclin-dependent kinase B1-1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010696 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000082 G1/S transition of mitotic cell cycle Biological Process

GO:0007165 signal transduction Biological Process

GO:0010389 regulation of G2/M transition of mitotic cell cycle Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0051301 cell division Biological Process

GO:0051445 regulation of meiotic cell cycle Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004693 cyclin-dependent protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.629

Rank 1 · TkA05G451790 · TK1151

Cytoplasm0.534

Rank 2 · TkA05G451790 · TK1151

Cell membrane0.051

Rank 3 · TkA05G451790 · TK1151

Mitochondrion0.041

Rank 4 · TkA05G451790 · TK1151

Endoplasmic reticulum0.030

Rank 5 · TkA05G451790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12330Haspin_kinase11-204 aa

PF25986Kazrin27-51 aa

PF03109ABC138-79 aa

PF18618HP026839-53 aa

PF00069Pkinase47-337 aa

PF07714PK_Tyr_Ser-Thr49-254 aa

PF01636APH53-132 aa

PF06293Kdo89-190 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G451790	`PF12330`	Haspin_kinase	11	204	0.00011	22.1
TkA05G451790	`PF25986`	Kazrin	27	51	0.04	14.2
TkA05G451790	`PF03109`	ABC1	38	79	0.00017	21.6
TkA05G451790	`PF18618`	HP0268	39	53	0.056	14.5
TkA05G451790	`PF00069`	Pkinase	47	337	2.1e-69	234.6
TkA05G451790	`PF07714`	PK_Tyr_Ser-Thr	49	254	8.8e-30	104.6
TkA05G451790	`PF01636`	APH	53	132	0.14	12.6
TkA05G451790	`PF06293`	Kdo	89	190	0.004	17.4
TkA05G451790	`PF18618`	HP0268	101	155	0.056	14.5
TkA05G451790	`PF25986`	Kazrin	125	146	0.04	14.2
TkA05G451790	`PF03109`	ABC1	147	217	0.00017	21.6
TkA05G451790	`PF01636`	APH	172	188	0.14	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LG64`	Arabidopsis thaliana	sp\|Q8LG64\|CKB22_ARATH Cyclin-dependent kinase B2-2	85.900%	Swiss-Prot	High
`Q8LF80`	Arabidopsis thaliana	sp\|Q8LF80\|CKB21_ARATH Cyclin-dependent kinase B2-1	82.900%	Swiss-Prot	High
`Q0J4I1`	Oryza sativa subsp. japonica	sp\|Q0J4I1\|CKB21_ORYSJ Cyclin-dependent kinase B2-1	77.300%	Swiss-Prot	High
`Q8L4P8`	Oryza sativa subsp. japonica	sp\|Q8L4P8\|CKB11_ORYSJ Cyclin-dependent kinase B1-1	69.800%	Swiss-Prot	High

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