TkA05G429460 | RubberDandelionOmics

Gene overview

TkA05G429460

Reference: TK1151 Chr: Chr05 Coordinates: 107111459-107113339 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1449 bp · TkA05G429460|TK1151|cDNA

GACTATAACCTTTTTCCCGCCAAAATCCCATCAATTTCTACCCCTCTCCACCACTCTGTAGAGCTTCTGTATTGTTGTTCTTCGTCTCCACTCTTTCTCTCTAGAATCAACAACAGTTTCACTCTCACACGCAAGAAAATGTTGGAGCTTAGGTTAGTGCAGGGTAGTTTGTTGAAGAAAGTGATGGAATCCATCAAGGATCTGGTGAACGACGCTAACTTCGACTGTTCGGCGGCGGGATTCTCACTGCAAGCCATGGA...

CDS

Download CDS FASTA

1200 bp · TkA05G429460|TK1151|CDS

GACTATAACCTTTTTCCCGCCAAAATCCCATCAATTTCTACCCCTCTCCACCACTCTGTAGAGCTTCTGTATTGTTGTTCTTCGTCTCCACTCTTTCTCTCTAGAATCAACAACAGTTTCACTCTCACACGCAAGAAAATGTTGGAGCTTAGGTTAGTGCAGGGTAGTTTGTTGAAGAAAGTGATGGAATCCATCAAGGATCTGGTGAACGACGCTAACTTCGACTGTTCGGCGGCGGGATTCTCACTGCAAGCCATGGA...

Protein

Download Protein FASTA

399 aa · TkA05G429460|TK1151|PROTEIN

DYNLFPAKIPSISTPLHHSVELLYCCSSSPLFLSRINNSFTLTRKKMLELRLVQGSLLKKVMESIKDLVNDANFDCSAAGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNMAKMLRCAGNDDIVTIKADDGGDCVTFMFESPNQDKIADFEMKLMDIDSEHLGIPEAEYEAIVRMPSSEFARICKDLSTIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTSVDKPEEATIIEMETPVSLTFALRYMNS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G429460`
TK1151 ID	TkA05G429460
OH-1004 ID	LXL04_021878
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.900
Protein coverage (%)	TK1151 94.236 / OH-1004 93.300 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G429460

Location Chr05:107111459-107113339 (+)

Description Similar to Proliferating cell nuclear antigen large form

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0805200`	Confers DNA tethering and processivity to DNA polymerases and other proteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021878 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006272 leading strand elongation Biological Process

GO:0006275 regulation of DNA replication Biological Process

GO:0006298 mismatch repair Biological Process

GO:0019985 translesion synthesis Biological Process

GO:0070207 protein homotrimerization Biological Process

GO:0140861 DNA repair-dependent chromatin remodeling Biological Process

GO:1902969 mitotic DNA replication Biological Process

GO:0005634 nucleus Cellular Component

GO:0043626 PCNA complex Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003682 chromatin binding Molecular Function

GO:0003684 damaged DNA binding Molecular Function

KEGG gene cross-reference

dosa:Os02g0805200

nta:107779602

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.960

Rank 1 · TkA05G429460 · TK1151

Cytoplasm0.157

Rank 2 · TkA05G429460 · TK1151

Cell membrane0.018

Rank 3 · TkA05G429460 · TK1151

Mitochondrion0.013

Rank 4 · TkA05G429460 · TK1151

Endoplasmic reticulum0.010

Rank 5 · TkA05G429460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00705PCNA_N47-171 aa

PF04139Rad960-261 aa

PF11389Porin_OmpL1102-132 aa

PF02747PCNA_C173-300 aa

PF11389Porin_OmpL1198-292 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G429460	`PF00705`	PCNA_N	47	171	9.1e-58	194.2
TkA05G429460	`PF04139`	Rad9	60	261	0.00015	22.0
TkA05G429460	`PF11389`	Porin_OmpL1	102	132	0.0092	15.9
TkA05G429460	`PF02747`	PCNA_C	173	300	3.8e-60	202.4
TkA05G429460	`PF11389`	Porin_OmpL1	198	292	0.0092	15.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P17070`	Oryza sativa subsp. japonica	sp\|P17070\|PCNA_ORYSJ DNA sliding clamp PCNA	88.900%	Swiss-Prot	Medium

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