RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G425800
Reference: TK1151 Chr: Chr05 Coordinates: 106184859-106188332 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2726 bp · TkA05G425800|TK1151|cDNA

TTACAAGTATCTTTACATCTATCTCTGTGTCCAAAAAGCGTGCCAATCACGTGCAACCTCATCATATTTCTACAAATCCACCATTTTAATCCTACTGTTCCATTCACACTCTATACACACACATATCTCTTTCTCTCTCTAGAGAGAGATTTCTAATTTCTCCTTCTTGTTCCATCAATGGAGTCCAATTTCATTTTCCACAAATACCCTTTTCAAAAAGTTCACCATCTTTCAACCTATACTTTCCACCCATTCAAGTC...

CDS

Download CDS FASTA

2292 bp · TkA05G425800|TK1151|CDS

ATGGAGTCCAATTTCATTTTCCACAAATACCCTTTTCAAAAAGTTCACCATCTTTCAACCTATACTTTCCACCCATTCAAGTCCAACAAAAACACACACTATTTCACCTTACTACTACACCTACTAATAATTTGCAGTCTCCCTTTCGCTGTTTCAGTTAAATCATGGGATGGAATTATAGTTACAGAATCCAACCTTCAAGCTCTTCAAGCTTTCAAACAAGAACTCATTGACCCAAATGGGTTTTTGAAAAGCTGGAA...

Protein

Download Protein FASTA

763 aa · TkA05G425800|TK1151|PROTEIN

MESNFIFHKYPFQKVHHLSTYTFHPFKSNKNTHYFTLLLHLLIICSLPFAVSVKSWDGIIVTESNLQALQAFKQELIDPNGFLKSWNDSGYGACSGGWEGIKCAEGQVIIIQLPWRSLGGRISSKIGQLQALRKLSVHNNAIGGSIPMELGFLINLRGIQLFNNKFSGSIPPTLGSCTLLQNLDFGNNSLVGEIPDSFGNCTKLYNVNLSLNSLSGSVPVSLSQSNSLMFLSLQFNNFSGVLPDSWGGGKNGDKSIVKSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G425800
TK1151 IDTkA05G425800
OH-1004 IDLXL04_021824
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G425800
LocationChr05:106184859-106188332 (+)
DescriptionSimilar to IMK3: Probable leucine-rich repeat receptor-like protein kinase IMK3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g56100 Can phosphorylate AGL24. No verified direct reference in this release
At3g51740 Probably inactive leucine-rich repeat receptor-like protein kinase IMK2. No verified direct reference in this release
At2g26730 Probable inactive receptor kinase At2g26730. No verified direct reference in this release
At1g68400 Probable leucine-rich repeat receptor-like protein kinase At1g68400. No verified direct reference in this release
At3g24660 Does not seem to have conserved a kinase activity. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021824 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001558 regulation of cell growth Biological Process
GO:0010286 heat acclimation Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0033612 receptor serine/threonine kinase binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT3G51740
ath:AT3G56100
dosa:Os02g0777400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.878
Rank 1 · TkA05G425800 · TK1151
Endoplasmic reticulum0.091
Rank 2 · TkA05G425800 · TK1151
Cytoplasm0.060
Rank 3 · TkA05G425800 · TK1151
Nucleus0.041
Rank 4 · TkA05G425800 · TK1151
Lysosome / Vacuole0.023
Rank 5 · TkA05G425800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10601zf-LITAF-like26-51 aa
PF03579SHP31-48 aa
PF08263LRRNT_266-103 aa
PF12799LRR_4125-142 aa
PF23598LRR_14125-235 aa
PF23211LRR_LRWD1126-167 aa
PF13855LRR_8128-166 aa
PF12799LRR_4131-166 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G425800PF10601zf-LITAF-like26511.210.1
TkA05G425800PF03579SHP31483.18.3
TkA05G425800PF08263LRRNT_2661039.8e-1039.3
TkA05G425800PF12799LRR_41251428.1e-1555.2
TkA05G425800PF23598LRR_141252351.5e-1144.4
TkA05G425800PF23211LRR_LRWD11261670.5710.6
TkA05G425800PF13855LRR_81281663.9e-1865.7
TkA05G425800PF12799LRR_41311668.1e-1555.2
TkA05G425800PF00560LRR_11321525.5e-2891.7
TkA05G425800PF13516LRR_61321440.02215.5
TkA05G425800PF23211LRR_LRWD11542400.5710.6
TkA05G425800PF00560LRR_11551775.5e-2891.7
TkA05G425800PF12799LRR_41551948.1e-1555.2
TkA05G425800PF29594LRR_SKP21742130.02714.4
TkA05G425800PF13516LRR_61771890.02215.5
TkA05G425800PF00560LRR_11802015.5e-2891.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGP9Arabidopsis thalianasp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK371.200%Swiss-ProtHigh
Q9SCT4Arabidopsis thalianasp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK263.900%Swiss-ProtHigh
O48788Arabidopsis thalianasp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g2673044.300%Swiss-ProtLow
Q9M9C5Arabidopsis thalianasp|Q9M9C5|Y1680_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g6840044.700%Swiss-ProtLow
P33543Arabidopsis thalianasp|P33543|TMKL1_ARATH Putative kinase-like protein TMKL142.100%Swiss-ProtLow

JBrowse

View in Genome Browser