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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G421730
Reference: TK1151 Chr: Chr05 Coordinates: 105116064-105120147 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1260 bp · TkA05G421730|TK1151|cDNA

ACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATGGGGGAGAGAGAGGAGACTCCATCGAAGCCACCACACTTTGTGCTCATCCATGGTATAAGTGGAGGAAGTTGGTGTTGGTACAAGCTAAAAAGCATGATGTACAACTCAGGATACATGGTGACTTGCATAGACCTCAAAGGGGCAGGCATACATCCTTCTGACCCTAACACAATCC...

CDS

Download CDS FASTA

801 bp · TkA05G421730|TK1151|CDS

ATGGGGGAGAGAGAGGAGACTCCATCGAAGCCACCACACTTTGTGCTCATCCATGGTATAAGTGGAGGAAGTTGGTGTTGGTACAAGCTAAAAAGCATGATGTACAACTCAGGATACATGGTGACTTGCATAGACCTCAAAGGGGCAGGCATACATCCTTCTGACCCTAACACAATCCTCTCCTTCGATGAATACAATGAACCTCTCCTTCATTTCTTATCTTCCTTGCCTCCTCATCAAAAGGTGATCTTAGTGGGGCA...

Protein

Download Protein FASTA

266 aa · TkA05G421730|TK1151|PROTEIN

MGEREETPSKPPHFVLIHGISGGSWCWYKLKSMMYNSGYMVTCIDLKGAGIHPSDPNTILSFDEYNEPLLHFLSSLPPHQKVILVGHSAGGLSVTQATHKFSNKISLAVYVAGTMLKNGLLTEEDIKDGVPDLSEYGDAYDLKFGLGPNQPPTSATIKKDLQRKILYHTSSPEDYTLASMLLRPGPICALLNAQFPEVNEDVENVPRVYIKTLYDRVVKPEQQEKMIAKWPPSHVYSLESDHSPNFSSPFALFGLLVKVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G421730
TK1151 IDTkA05G421730
OH-1004 IDLXL04_021794
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)98.900
Protein coverage (%)TK1151 34.962 / OH-1004 29.524
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G421730
LocationChr05:105116064-105120147 (-)
DescriptionSimilar to MES17: Methylesterase 17
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g10870 Methylesterase that efficiently and specifically hydrolyzes methyl indole-3-acetic acid (MeIAA) to IAA (auxin).
Inactive methyl indole-3-acetic acid ester can be hydrolyzed and activated by several esterases belonging to the AtMES esterase family of Arabidopsis.2008 · DOI: 10.1104/pp.108.118224
At5g58310 Methylesterase shown to have methyl indole-3-acetic acid (MeIAA) esterase activity in vitro. No verified direct reference in this release
At4g16690 Involved in the chlorophyll breakdown by its action in fluorescent chlorophyll catabolites (FCCs) demethylation.
MES16, a member of the methylesterase protein family, specifically demethylates fluorescent chlorophyll catabolites during chlorophyll breakdown in Arabidopsis.2012 · DOI: 10.1104/pp.111.188870
Crystal structure of methylesterase family member 16 (MES16) from Arabidopsis thaliana.2016 · DOI: 10.1016/j.bbrc.2016.04.115
At1g33990 Putative methylesterase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021794 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0009408 response to heat Biological Process
GO:0009409 response to cold Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009694 jasmonic acid metabolic process Biological Process
GO:0009696 salicylic acid metabolic process Biological Process
GO:0010150 leaf senescence Biological Process
GO:0015996 chlorophyll catabolic process Biological Process
GO:0031408 oxylipin biosynthetic process Biological Process
GO:0033310 chlorophyll a catabolic process Biological Process
GO:0033473 indoleacetic acid conjugate metabolic process Biological Process
GO:0045727 positive regulation of translation Biological Process
KEGG gene cross-reference
ag:BAE54383
ath:AT3G08720
ath:AT3G10870
ath:AT4G16690
ath:AT5G58310
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.751
Rank 1 · TkA05G421730 · TK1151
Nucleus0.335
Rank 2 · TkA05G421730 · TK1151
Endoplasmic reticulum0.055
Rank 3 · TkA05G421730 · TK1151
Lysosome / Vacuole0.049
Rank 4 · TkA05G421730 · TK1151
Cell membrane0.048
Rank 5 · TkA05G421730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00561Abhydrolase_112-163 aa
PF12697Abhydrolase_614-251 aa
PF12146Hydrolase_414-118 aa
PF00975Thioesterase15-92 aa
PF00326Peptidase_S933-49 aa
PF10230LIDHydrolase38-116 aa
PF07819PGAP174-103 aa
PF03283PAE78-112 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G421730PF00561Abhydrolase_1121632.9e-1763.9
TkA05G421730PF12697Abhydrolase_6142511.2e-1559.4
TkA05G421730PF12146Hydrolase_4141183.5e-1143.6
TkA05G421730PF00975Thioesterase15920.212.5
TkA05G421730PF00326Peptidase_S933490.3311.1
TkA05G421730PF10230LIDHydrolase381160.04214.3
TkA05G421730PF07819PGAP1741030.04114.3
TkA05G421730PF03283PAE781120.1411.9
TkA05G421730PF06821Ser_hydrolase791170.05314.2
TkA05G421730PF00326Peptidase_S9801260.3311.1
TkA05G421730PF06821Ser_hydrolase1942340.05314.2
TkA05G421730PF00326Peptidase_S92092280.3311.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SG92Arabidopsis thalianasp|Q9SG92|MES17_ARATH Methylesterase 1762.000%Swiss-ProtHigh
Q9LVL9Arabidopsis thalianasp|Q9LVL9|MES18_ARATH Methylesterase 1847.100%Swiss-ProtMedium
O23512Arabidopsis thalianasp|O23512|MES16_ARATH pFDCC methylesterase MES1643.900%Swiss-ProtMedium
Q9FVW3Arabidopsis thalianasp|Q9FVW3|MES14_ARATH Putative methylesterase 14, chloroplastic34.100%Swiss-ProtMedium

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