LXL04_021794 | RubberDandelionOmics

Gene overview

LXL04_021794

Reference: OH-1004 Chr: Chr04 Coordinates: 137032007-137034477 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

948 bp · LXL04_021794|LXL04_021794|OH1004|cDNA

ATGTACTCAACGTCTCAACCTCATAAGCTGGACTCAGTTATAACTTATAAGCGGCAAATCGATAAAAAAATTCCTTCTTCGTCAGAACAACTTTTCTTCTACAGCGAATCCCATCGGCGATCTATCCTCAGAATCATTTCTCGCTGTGAGGATTTTATTTCCATTTTTTCTTTTCGATGTACAGTGTATCGTAAATTATCGATATGTTATTTGCGTGAAATTACATTGAAGAATTTCGACATAGAATTAGTGATCGATGT...

CDS

Download CDS FASTA

948 bp · LXL04_021794|LXL04_021794|OH1004|CDS

ATGTACTCAACGTCTCAACCTCATAAGCTGGACTCAGTTATAACTTATAAGCGGCAAATCGATAAAAAAATTCCTTCTTCGTCAGAACAACTTTTCTTCTACAGCGAATCCCATCGGCGATCTATCCTCAGAATCATTTCTCGCTGTGAGGATTTTATTTCCATTTTTTCTTTTCGATGTACAGTGTATCGTAAATTATCGATATGTTATTTGCGTGAAATTACATTGAAGAATTTCGACATAGAATTAGTGATCGATGT...

Protein

Download Protein FASTA

315 aa · LXL04_021794|LXL04_021794|OH1004|PROTEIN

MYSTSQPHKLDSVITYKRQIDKKIPSSSEQLFFYSESHRRSILRIISRCEDFISIFSFRCTVYRKLSICYLREITLKNFDIELVIDVNWLNCMIFMISTSIGTSSVSCKAGNKNNFPFWILICLFSRFSGSTPFFTVDHVDFDFDFSDVFGPPPSPQQPSVTNTNELLVYDEPEVLCSRSHSLVGPTTFINQSLKLSIMALQELEESPFVDVVDDDNDDGSLDYTLASMLLRPGPICALLNAQFPEVNEDVENVPRVYIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021794`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021794

Location Chr04:137032007-137034477 (-)

Description Similar to MES17: Methylesterase 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10870`	Methylesterase that efficiently and specifically hydrolyzes methyl indole-3-acetic acid (MeIAA) to IAA (auxin).	Inactive methyl indole-3-acetic acid ester can be hydrolyzed and activated by several esterases belonging to the AtMES esterase family of Arabidopsis.2008 · DOI: 10.1104/pp.108.118224
`At5g58310`	Methylesterase shown to have methyl indole-3-acetic acid (MeIAA) esterase activity in vitro.	No verified direct reference in this release
`At4g16690`	Involved in the chlorophyll breakdown by its action in fluorescent chlorophyll catabolites (FCCs) demethylation.	MES16, a member of the methylesterase protein family, specifically demethylates fluorescent chlorophyll catabolites during chlorophyll breakdown in Arabidopsis.2012 · DOI: 10.1104/pp.111.188870 Crystal structure of methylesterase family member 16 (MES16) from Arabidopsis thaliana.2016 · DOI: 10.1016/j.bbrc.2016.04.115
`At3g08720`	Downstream effector of TOR signaling pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021794 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009694 jasmonic acid metabolic process Biological Process

GO:0009696 salicylic acid metabolic process Biological Process

GO:0010150 leaf senescence Biological Process

GO:0015996 chlorophyll catabolic process Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0033310 chlorophyll a catabolic process Biological Process

GO:0033473 indoleacetic acid conjugate metabolic process Biological Process

GO:0045727 positive regulation of translation Biological Process

KEGG gene cross-reference

ag:BAE54383

ath:AT3G08720

ath:AT3G10870

ath:AT4G16690

ath:AT5G58310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.442

Rank 1 · LXL04_021794 · OH-1004

Cytoplasm0.421

Rank 2 · LXL04_021794 · OH-1004

Endoplasmic reticulum0.095

Rank 3 · LXL04_021794 · OH-1004

Cell membrane0.090

Rank 4 · LXL04_021794 · OH-1004

Mitochondrion0.088

Rank 5 · LXL04_021794 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SG92`	Arabidopsis thaliana	Methylesterase 17	59.783%	Swiss-Prot	weak database homology
`Q9LVL9`	Arabidopsis thaliana	Methylesterase 18	38.281%	Swiss-Prot	weak database homology
`O23512`	Arabidopsis thaliana	pFDCC methylesterase MES16	44.944%	Swiss-Prot	weak database homology
`Q39030`	Arabidopsis thaliana	Serine/threonine-protein kinase AtPK2/AtPK19	37.500%	Swiss-Prot	weak database homology

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