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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G421080
Reference: TK1151 Chr: Chr05 Coordinates: 104918552-104921945 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1294 bp · TkA05G421080|TK1151|cDNA

TGGAACCCCTGCTTATTTTATCAAACCCCTCTTCTTCCACCTCCGGCTTCCAAAAGGATCGCCAATGGCTCTACTCCACCGATTTGGATGCTGTTCTCCTCCTTCTCCTCTTCCTCCTCTCTCATTCCAAAAGTCAACCTCCGGTTCCGACTCATACATCGTCTCTGCTTTTCAGCGCCGTGTCCTTTATCCGCGGAGATTTTCGTCGTTTAGATTAACCGCAACCCTCGCCGCTGAATCACCGGCCGGCTCTGTGTCAG...

CDS

Download CDS FASTA

972 bp · TkA05G421080|TK1151|CDS

ATGGCTCTACTCCACCGATTTGGATGCTGTTCTCCTCCTTCTCCTCTTCCTCCTCTCTCATTCCAAAAGTCAACCTCCGGTTCCGACTCATACATCGTCTCTGCTTTTCAGCGCCGTGTCCTTTATCCGCGGAGATTTTCGTCGTTTAGATTAACCGCAACCCTCGCCGCTGAATCACCGGCCGGCTCTGTGTCAGATGGCGGAGGTGGACCGCCGAAGCTGCTTATGGAAGTCAAGGACCTCACCGCCGTCATCGCTGA...

Protein

Download Protein FASTA

323 aa · TkA05G421080|TK1151|PROTEIN

MALLHRFGCCSPPSPLPPLSFQKSTSGSDSYIVSAFQRRVLYPRRFSSFRLTATLAAESPAGSVSDGGGGPPKLLMEVKDLTAVIAESGQKILNGVNLSIYEGEIHAIMGKNGSGKSTFAKVLVGHRDYEVTGGSVVFKGENLLEMEPEDRSLAGLFLSFQSPVEIPGVSNNDFLHMAYNARQRKLGQTELQPLEFYGHIRPILEMVNIKPDFLNRNVNEGFSGGEKKRNEILQLAVLGADLAILDEIDSGLDVDALRDV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G421080
TK1151 IDTkA05G421080
OH-1004 IDLXL04_021787
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G421080
LocationChr05:104918552-104921945 (-)
DescriptionSimilar to ABCI6: ABC transporter I family member 6, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g10670 Essential protein.
AtNAP7 is a plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis.2004 · DOI: 10.1073/pnas.0400799101

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021787 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010027 thylakoid membrane organization Biological Process
GO:0016226 iron-sulfur cluster assembly Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:1990229 iron-sulfur cluster assembly complex Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0042626 ATPase-coupled transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT3G10670
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.975
Rank 1 · TkA05G421080 · TK1151
Mitochondrion0.038
Rank 2 · TkA05G421080 · TK1151
Nucleus0.016
Rank 3 · TkA05G421080 · TK1151
Cytoplasm0.015
Rank 4 · TkA05G421080 · TK1151
Cell membrane0.011
Rank 5 · TkA05G421080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005ABC_tran93-247 aa
PF13555AAA_29100-120 aa
PF13481AAA_25100-124 aa
PF03193RsgA_GTPase102-132 aa
PF02463SMC_N103-120 aa
PF13304AAA_21105-155 aa
PF13401AAA_22105-265 aa
PF13175AAA_15105-123 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G421080PF00005ABC_tran932472.4e-2074.2
TkA05G421080PF13555AAA_291001200.005517.2
TkA05G421080PF13481AAA_251001240.3411.2
TkA05G421080PF03193RsgA_GTPase1021320.1312.8
TkA05G421080PF02463SMC_N1031209.4e-0729.2
TkA05G421080PF13304AAA_211051551.3e-0629.3
TkA05G421080PF13401AAA_221052650.06314.3
TkA05G421080PF13175AAA_151051230.1612.2
TkA05G421080PF01935DUF871071240.009416.8
TkA05G421080PF13671AAA_331071320.07614.0
TkA05G421080PF13238AAA_181081520.01716.3
TkA05G421080PF03266NTPase_11081230.05614.0
TkA05G421080PF02463SMC_N2042949.4e-0729.2
TkA05G421080PF03266NTPase_12302880.05614.0
TkA05G421080PF13304AAA_212412791.3e-0629.3
TkA05G421080PF13481AAA_252412660.3411.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9CAF5Arabidopsis thalianasp|Q9CAF5|AB6I_ARATH ABC transporter I family member 6, chloroplastic79.400%Swiss-ProtHigh

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