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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G420990
Reference: TK1151 Chr: Chr05 Coordinates: 104886985-104888860 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1515 bp · TkA05G420990|TK1151|cDNA

GAAAAGCATGAAAGGGTATAAATTTCAATAAGCGCGTGAACCATAAGCCAGGGTGCAAAACACTTCCACCTTGACTAATTGGCCATCTCTTCCTACATCAAGAAACTTGGTTTTAGTTTCTTCACTTCAAGAAGCCATGGGAGGGCCTGGTTGTGAATCTGTTGATAACTTCAAGTCAATTCTGGAACAAGAAGGAATTCACCATCTTTTATCCAATGAACTCAAGGTACCTTTATCATCATCAATTCCAACAAAAGGAA...

CDS

Download CDS FASTA

867 bp · TkA05G420990|TK1151|CDS

ATGAAGTCCATGCCATGGCTTGTGGTTCCATTTGATGTCAATTTACAAAAGAAACTTGGTAATTTGTATAAAGTTGATCAAATCCCATCGTTTATTCCATTGAATATCGACACAAAATTGCCTGCAAAAGATTCCGTGGGACTTATAAAAGACTATGGCCCCGATGCATTTCCGTTCACTAAGAAAAGACAAGAAGAGTTGAAAGCTATAGATGAAGAAAAACGTCAAGAAGGGAAGTTGGAACACCTTTTTGCTTATGG...

Protein

Download Protein FASTA

288 aa · TkA05G420990|TK1151|PROTEIN

MKSMPWLVVPFDVNLQKKLGNLYKVDQIPSFIPLNIDTKLPAKDSVGLIKDYGPDAFPFTKKRQEELKAIDEEKRQEGKLEHLFAYGINSKGEKIHASELVGKTIGLYFGAHWCPPCREFTTQLIEAYNDIGKNKDQEFEVVYVSTDKDVKEFELGLNKMPWVAIPFHDKTRQDLCRIFEVQWIPTLIILGPNGKTISTNGREVISLFGAKGFPFTESKILGVESSLMKEGDELAREITDRKHEHVLKLDMVKAYICDFC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G420990
TK1151 IDTkA05G420990
OH-1004 IDLXL04_021785
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 71.111
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G420990
LocationChr05:104886985-104888860 (-)
DescriptionSimilar to At4g31240: Probable nucleoredoxin 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g31240 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
At1g60420 Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0608600 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
Os03g0405900 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
Os01g0794400 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021785 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009860 pollen tube growth Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0080092 regulation of pollen tube growth Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0004791 thioredoxin-disulfide reductase (NADPH) activity Molecular Function
KEGG gene cross-reference
ath:AT1G60420
ath:AT4G31240
dosa:Os04g0608600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.606
Rank 1 · TkA05G420990 · TK1151
Nucleus0.244
Rank 2 · TkA05G420990 · TK1151
Endoplasmic reticulum0.123
Rank 3 · TkA05G420990 · TK1151
Cell membrane0.106
Rank 4 · TkA05G420990 · TK1151
Mitochondrion0.095
Rank 5 · TkA05G420990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13905Thioredoxin_82-34 aa
PF00085Thioredoxin9-32 aa
PF20207PedC-like19-34 aa
PF13098Thioredoxin_257-90 aa
PF10589NADH_4Fe-4S63-83 aa
PF08534Redoxin88-194 aa
PF02630SCO1-SenC88-147 aa
PF00578AhpC-TSA89-194 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G420990PF13905Thioredoxin_82341.9e-33115.4
TkA05G420990PF00085Thioredoxin9327.9e-0523.3
TkA05G420990PF20207PedC-like19340.1512.8
TkA05G420990PF13098Thioredoxin_257907.9e-0833.3
TkA05G420990PF10589NADH_4Fe-4S63830.09513.3
TkA05G420990PF08534Redoxin881941.9e-0525.2
TkA05G420990PF02630SCO1-SenC881470.05214.0
TkA05G420990PF00578AhpC-TSA891945e-0730.4
TkA05G420990PF13905Thioredoxin_81021951.9e-33115.4
TkA05G420990PF13098Thioredoxin_21021987.9e-0833.3
TkA05G420990PF13899Thioredoxin_71021450.1313.1
TkA05G420990PF20207PedC-like1021490.1512.8
TkA05G420990PF00085Thioredoxin1071497.9e-0523.3
TkA05G420990PF00130C1_11101210.09713.2
TkA05G420990PF03107C1_21121193e-0731.4
TkA05G420990PF10589NADH_4Fe-4S1121380.09513.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VZQ0Arabidopsis thalianasp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 357.800%Swiss-ProtHigh
O80763Arabidopsis thalianasp|O80763|NRX1_ARATH Probable nucleoredoxin 137.000%Swiss-ProtMedium
Q7XPE8Oryza sativa subsp. japonicasp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 347.500%Swiss-ProtMedium
Q7Y0F2Oryza sativa subsp. japonicasp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-235.300%Swiss-ProtMedium
Q0JIL1Oryza sativa subsp. japonicasp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 235.000%Swiss-ProtMedium

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