Gene Card
Gene overview
cDNA / CDS / Protein Sequences
450 bp · TkA05G417940|TK1151|cDNA
ATGTTCTTCAGATTCCCTAACCTCACACACATCGATTTACTTCACGGAACTATCGTTTCCAATAGTATCACCCCAAATTTAATCGGTCATGAATTGGGCACTTTTCACATATCTCCTGATGATTTTCTACACGACGACCATTGTTTATTACCTGTCGATGAAGTTGATTTCGGTTTGAAACTTTTAGCTAGCATGTACCCCAATCTGCGTCGACTTGTAGTTCTAAATTGCAGTGAAATCGGATTACTAAGTGTAGCAGA...
450 bp · TkA05G417940|TK1151|CDS
ATGTTCTTCAGATTCCCTAACCTCACACACATCGATTTACTTCACGGAACTATCGTTTCCAATAGTATCACCCCAAATTTAATCGGTCATGAATTGGGCACTTTTCACATATCTCCTGATGATTTTCTACACGACGACCATTGTTTATTACCTGTCGATGAAGTTGATTTCGGTTTGAAACTTTTAGCTAGCATGTACCCCAATCTGCGTCGACTTGTAGTTCTAAATTGCAGTGAAATCGGATTACTAAGTGTAGCAGA...
Protein
Download Protein FASTA149 aa · TkA05G417940|TK1151|PROTEIN
MFFRFPNLTHIDLLHGTIVSNSITPNLIGHELGTFHISPDDFLHDDHCLLPVDEVDFGLKLLASMYPNLRRLVVLNCSEIGLLSVAEDCPTMQELILHRCNDHLLCGIAAFTNLQILKLIGVVDGFYNSLVSDRGLTILAQGCKETSKT
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G417940 |
|---|---|
| TK1151 ID | TkA05G417940 |
| OH-1004 ID | LXL04_021740 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 98.000 |
| Protein coverage (%) | TK1151 99.329 / OH-1004 30.390Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G417940 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:104054279-104054728 (-) | |||||||||
| Description | Similar to At5g07670: F-box protein At5g07670 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006289 nucleotide-excision repair Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0010225 response to UV-C Biological Process GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process GO:0005576 extracellular region Cellular Component GO:0005737 cytoplasm Cellular Component GO:0019005 SCF ubiquitin ligase complex Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT4G15475 ath:AT5G07670 ath:AT5G51370 ath:AT5G51380 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12799LRR_45-16 aaPF12799LRR_462-80 aaPF12799LRR_467-101 aaPF03854zf-P1174-91 aaPF08944p47_phox_C93-103 aaPF03854zf-P1197-106 aaPF12799LRR_4108-119 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G417940 | PF12799 | LRR_4 | 5 | 16 | 0.15 | 13.1 |
| TkA05G417940 | PF12799 | LRR_4 | 62 | 80 | 0.15 | 13.1 |
| TkA05G417940 | PF12799 | LRR_4 | 67 | 101 | 0.15 | 13.1 |
| TkA05G417940 | PF03854 | zf-P11 | 74 | 91 | 2.0 | 8.9 |
| TkA05G417940 | PF08944 | p47_phox_C | 93 | 103 | 0.098 | 12.8 |
| TkA05G417940 | PF03854 | zf-P11 | 97 | 106 | 2.0 | 8.9 |
| TkA05G417940 | PF12799 | LRR_4 | 108 | 119 | 0.15 | 13.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.