LXL04_021740 | RubberDandelionOmics

Gene overview

LXL04_021740

Reference: OH-1004 Chr: Chr04 Coordinates: 136094016-136096143 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1464 bp · LXL04_021740|LXL04_021740|OH1004|cDNA

ATGTCGCCGTGCTCTGTGGAGAATCAAAACCCTAACAAGTCTTCACCGTTCAATATCTCAAATCCCTGGTTGAAGAACGAAAAAGTGCTCGATCATGTCGTGTACGCTGCCTTACGTCGACTTTCCTTATCCAACAAACACCTTGCCGATGTCACCGTTGCTTCTTCCCCTCCACAACCTCCCACGAACAGCAACAAAATCCTAGCTTTTAATTTCCCCCAAGTTGTTGTATCTGATGATTTCACTCCTCTTCTTTCTGA...

CDS

Download CDS FASTA

1464 bp · LXL04_021740|LXL04_021740|OH1004|CDS

ATGTCGCCGTGCTCTGTGGAGAATCAAAACCCTAACAAGTCTTCACCGTTCAATATCTCAAATCCCTGGTTGAAGAACGAAAAAGTGCTCGATCATGTCGTGTACGCTGCCTTACGTCGACTTTCCTTATCCAACAAACACCTTGCCGATGTCACCGTTGCTTCTTCCCCTCCACAACCTCCCACGAACAGCAACAAAATCCTAGCTTTTAATTTCCCCCAAGTTGTTGTATCTGATGATTTCACTCCTCTTCTTTCTGA...

Protein

Download Protein FASTA

487 aa · LXL04_021740|LXL04_021740|OH1004|PROTEIN

MSPCSVENQNPNKSSPFNISNPWLKNEKVLDHVVYAALRRLSLSNKHLADVTVASSPPQPPTNSNKILAFNFPQVVVSDDFTPLLSDEILLHILSKHQEISHCLVSKRWLNLQGRLVRSLRVLDWDFLISGRMFFRFPNLTHIDLLHGTIVSNSITPNLIGHELGTFHISPDDFLHDDHCLLPVDEVDFGLKLLASMYPNLRRLVVLNCSEIGLLSVAEDCPTMQELILHRCNDHLLCGIAAFTNLQILKLIGVVDGFYN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021740`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021740

Location Chr04:136094016-136096143 (-)

Description Similar to At5g07670: F-box protein At5g07670

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g07670`	F-box protein At5g07670.	No verified direct reference in this release
`At5g51380`	F-box protein At5g51380.	No verified direct reference in this release
`At5g51370`	F-box protein At5g51370.	No verified direct reference in this release
`At4g15475`	F-box/LRR-repeat protein 4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021740 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006289 nucleotide-excision repair Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0010225 response to UV-C Biological Process

GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0019005 SCF ubiquitin ligase complex Cellular Component

KEGG gene cross-reference

ath:AT4G15475

ath:AT5G07670

ath:AT5G51370

ath:AT5G51380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.760

Rank 1 · LXL04_021740 · OH-1004

Cytoplasm0.241

Rank 2 · LXL04_021740 · OH-1004

Cell membrane0.055

Rank 3 · LXL04_021740 · OH-1004

Endoplasmic reticulum0.043

Rank 4 · LXL04_021740 · OH-1004

Plastid0.025

Rank 5 · LXL04_021740 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VYT5`	Arabidopsis thaliana	F-box protein At5g07670	53.125%	Swiss-Prot	strong database homology
`Q9FGN3`	Arabidopsis thaliana	F-box protein At5g51380	50.114%	Swiss-Prot	strong database homology
`Q9FGN4`	Arabidopsis thaliana	F-box protein At5g51370	51.918%	Swiss-Prot	strong database homology
`Q9C5D2`	Arabidopsis thaliana	F-box/LRR-repeat protein 4	23.954%	Swiss-Prot	weak database homology

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