Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2177 bp · TkA05G416460|TK1151|cDNA
TGATCACTTCGCAAAAACTTCCAACCCAAAATTTTGAATCACATTGATGTTCTTCGTGGACTTTACGTGGGATTTCGTCGATTTAGTCTACCCAGCTAGTTCTAGATTGAAGAATTATTAATATACTTTTAAATTTTCTACACAATTCGGGGTTTTTTGAAGGTTGATGAGCCGATGAAGAAGATCAAGAAGAAAAAATCGAGGACACTGGAAATGGACGAAGATGAAGATATTATCAGAGATAAGAATCCCAATGCGAT...
1866 bp · TkA05G416460|TK1151|CDS
ATGAAGAAGATCAAGAAGAAAAAATCGAGGACACTGGAAATGGACGAAGATGAAGATATTATCAGAGATAAGAATCCCAATGCGATTTCAAATTTCAGAATTTCAGAGCCACTGAAGAACGCATTGAACACGAAGGGGATCGAGGCGCTGTTTCCTATTCAAGCTCGAACGTTTGAACCAATCTACGATGGTCTCGATTTGATCGGAAAGGCTAAAACCGGTCAGGGTAAAACATTGGCATTCATATTGCCAATACTGGA...
Protein
Download Protein FASTA621 aa · TkA05G416460|TK1151|PROTEIN
MKKIKKKKSRTLEMDEDEDIIRDKNPNAISNFRISEPLKNALNTKGIEALFPIQARTFEPIYDGLDLIGKAKTGQGKTLAFILPILESLINGPEQASRRIGYGRSPTILVLLPTRELAKQVFTDFKYYGDAVGLTSCCLYGGGGASISPQTVQLKRGVDIVVGAVGRVKDHIERGNLDFSSLKYRILDEADEMLRQGFVEDVEYILGKVNDATKVQTVLFSATLPAWVNHIASQFLKANKKTVDLVGVEAMKASENVRHI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G416460 |
|---|---|
| TK1151 ID | TkA05G416460 |
| OH-1004 ID | LXL04_011999 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 88.300 |
| Protein coverage (%) | TK1151 88.245 / OH-1004 45.029Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G416460 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:103640851-103646769 (-) | ||||||||||||
| Description | Similar to RH7: DEAD-box ATP-dependent RNA helicase 7 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0010584 pollen exine formation Biological Process GO:0016070 RNA metabolic process Biological Process GO:0080110 sporopollenin biosynthetic process Biological Process GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0016020 membrane Cellular Component GO:0003724 RNA helicase activity Molecular Function GO:0003729 mRNA binding Molecular Function GO:0004497 monooxygenase activity Molecular Function GO:0005506 iron ion binding Molecular Function GO:0005524 ATP binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G69500 ath:AT5G62190 dosa:Os09g0520700 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00270DEAD52-229 aaPF04851ResIII70-223 aaPF22916UTP25_NTPase-like98-124 aaPF22916UTP25_NTPase-like175-216 aaPF02662FlpD240-282 aaPF00271Helicase_C271-374 aaPF26142DD_DDX21-DDX50408-460 aaPF08152GUCT463-558 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G416460 | PF00270 | DEAD | 52 | 229 | 2.1e-40 | 138.9 |
| TkA05G416460 | PF04851 | ResIII | 70 | 223 | 0.0045 | 17.6 |
| TkA05G416460 | PF22916 | UTP25_NTPase-like | 98 | 124 | 0.24 | 11.5 |
| TkA05G416460 | PF22916 | UTP25_NTPase-like | 175 | 216 | 0.24 | 11.5 |
| TkA05G416460 | PF02662 | FlpD | 240 | 282 | 0.026 | 15.3 |
| TkA05G416460 | PF00271 | Helicase_C | 271 | 374 | 4e-27 | 95.4 |
| TkA05G416460 | PF26142 | DD_DDX21-DDX50 | 408 | 460 | 8.5e-20 | 71.3 |
| TkA05G416460 | PF08152 | GUCT | 463 | 558 | 1.2e-28 | 99.9 |
| TkA05G416460 | PF00271 | Helicase_C | 520 | 546 | 4e-27 | 95.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.