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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G408220
Reference: TK1151 Chr: Chr05 Coordinates: 101503126-101507583 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3138 bp · TkA05G408220|TK1151|cDNA

GAGACAGGTAATGCATTTGTAGTTCCAGTCCTCTCTCTCTTTCCCTCTCTCTAGGGTTTCCAGAAGCGCCGTTTTTGGTCGTTTGTTCGTTTATCGGGGAGAGTGTTCATCACTAACTGCTCAGGTAACAACTTACTGATTCTGTGATACAACACTACAACAGTCCTCTGAAAGAGTGTTCGCCAAGAAAACATGGCAATGGAAGTCACTCAAATTCTGCTAAGTGCACAATCAGCAGACGGATCTGTTCGAAAACATGC...

CDS

Download CDS FASTA

2592 bp · TkA05G408220|TK1151|CDS

ATGGCAATGGAAGTCACTCAAATTCTGCTAAGTGCACAATCAGCAGACGGATCTGTTCGAAAACATGCTGAAGAAACCTTAAAACAATTCCAGGAGCAAAACCTACCCGGATTCCTCTCATCTCTATCTGCAGAACTTGCAAATGAAGAAAAGCCAGTAGACAGCCGAAAGCTATCAGGTTTAATCCTCAAAAACGCCCTAGATGCAAAAGACCAACACACAAAATTTGAGCTGGTTCAAAGATGGTTATCACTAGACGT...

Protein

Download Protein FASTA

863 aa · TkA05G408220|TK1151|PROTEIN

MAMEVTQILLSAQSADGSVRKHAEETLKQFQEQNLPGFLSSLSAELANEEKPVDSRKLSGLILKNALDAKDQHTKFELVQRWLSLDVNIKTQIKSFLLQTLSSPVHEARSTASQVIAKVAGIELPQKQWPELITSLLSNIHQVPVHVKQATLETLGYMCEEVSPDVVEQDQVNKILTAVVQGMNSSEGSNDVRLAATRALYNALTFAQANFSNDNERDYIMRVVCEATLSPEVKIRQAAYECLVAISSSYYEKLSHYIQD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G408220
TK1151 IDTkA05G408220
OH-1004 IDLXL04_035368
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)87.300
Protein coverage (%)TK1151 100.000 / OH-1004 95.614
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G408220
LocationChr05:101503126-101507583 (+)
DescriptionSimilar to KPNB1: Importin subunit beta-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g53480 Acts as a negative effector of drought tolerance.
An Arabidopsis homolog of importin β1 is required for ABA response and drought tolerance.2013 · DOI: 10.1111/tpj.12207

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035368 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006404 RNA import into nucleus Biological Process
GO:0006606 protein import into nucleus Biological Process
GO:0006607 NLS-bearing protein import into nucleus Biological Process
GO:0006610 ribosomal protein import into nucleus Biological Process
GO:0007079 mitotic chromosome movement towards spindle pole Biological Process
GO:0007080 mitotic metaphase chromosome alignment Biological Process
GO:0030953 astral microtubule organization Biological Process
GO:0035332 positive regulation of hippo signaling Biological Process
GO:0040001 establishment of mitotic spindle localization Biological Process
GO:0045540 regulation of cholesterol biosynthetic process Biological Process
GO:0045542 positive regulation of cholesterol biosynthetic process Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
KEGG gene cross-reference
ath:AT5G53480
hsa:3837
mmu:16211
rno:24917
xla:100137718
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.757
Rank 1 · TkA05G408220 · TK1151
Cytoplasm0.604
Rank 2 · TkA05G408220 · TK1151
Cell membrane0.043
Rank 3 · TkA05G408220 · TK1151
Mitochondrion0.041
Rank 4 · TkA05G408220 · TK1151
Lysosome / Vacuole0.033
Rank 5 · TkA05G408220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24987HEAT_EF3_N7-31 aa
PF02985HEAT8-32 aa
PF26715HEAT_GCN1_28-67 aa
PF21547TTI18-31 aa
PF20926Htt_N-HEAT_111-159 aa
PF13646HEAT_213-32 aa
PF13513HEAT_EZ17-40 aa
PF23227HEAT_MROH2B_C19-43 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G408220PF24987HEAT_EF3_N7312.19.0
TkA05G408220PF02985HEAT8323.8e-1864.5
TkA05G408220PF26715HEAT_GCN1_28670.01616.0
TkA05G408220PF21547TTI18310.3911.3
TkA05G408220PF20926Htt_N-HEAT_1111595e-0834.2
TkA05G408220PF13646HEAT_213321.1e-0732.8
TkA05G408220PF13513HEAT_EZ17401.8e-2589.6
TkA05G408220PF23227HEAT_MROH2B_C19431.6e-0525.1
TkA05G408220PF10363RTP1_C119351.210.0
TkA05G408220PF03810IBN_N231022.7e-1453.6
TkA05G408220PF23271HEAT_GCN123381.1e-1249.1
TkA05G408220PF08389Xpo1381030.4811.2
TkA05G408220PF20168PDS5622910.0002719.6
TkA05G408220PF26715HEAT_GCN1_2821680.01616.0
TkA05G408220PF13513HEAT_EZ921181.8e-2589.6
TkA05G408220PF02985HEAT951203.8e-1864.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJD4Arabidopsis thalianasp|Q9FJD4|IMB1_ARATH Importin subunit beta-180.600%Swiss-ProtHigh

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