LXL04_035368 | RubberDandelionOmics

Gene overview

LXL04_035368

Reference: OH-1004 Chr: Chr08 Coordinates: 21244996-21248754 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2739 bp · LXL04_035368|LXL04_035368|OH1004|cDNA

ATGCCAGCTTTTCGTTGCTGCATATATCCGGTTATTGAAAACTTCTTGGTTTGGCCATTATTTCTAGTATTGGGGACAGTTTATTTGAATTCCTTAGCAGAGTGTCCGCCAGAAAAATTTATGGCATTGGAAGTCACCCAAATTCTGTTGAATGCACAAGCAGTTGATGGATCTGTCCGGAATCATGCTGAAGAGAGTTTAAAGCAATTCCAGGAGCAAAATCTACCTGGATTCCTATTATCTCTCTCTGGAGAGCTTGC...

CDS

Download CDS FASTA

2739 bp · LXL04_035368|LXL04_035368|OH1004|CDS

ATGCCAGCTTTTCGTTGCTGCATATATCCGGTTATTGAAAACTTCTTGGTTTGGCCATTATTTCTAGTATTGGGGACAGTTTATTTGAATTCCTTAGCAGAGTGTCCGCCAGAAAAATTTATGGCATTGGAAGTCACCCAAATTCTGTTGAATGCACAAGCAGTTGATGGATCTGTCCGGAATCATGCTGAAGAGAGTTTAAAGCAATTCCAGGAGCAAAATCTACCTGGATTCCTATTATCTCTCTCTGGAGAGCTTGC...

Protein

Download Protein FASTA

912 aa · LXL04_035368|LXL04_035368|OH1004|PROTEIN

MPAFRCCIYPVIENFLVWPLFLVLGTVYLNSLAECPPEKFMALEVTQILLNAQAVDGSVRNHAEESLKQFQEQNLPGFLLSLSGELANEEKPVDSRKLAGLILKNALDAKEQHRKYELIQRWLSLDVGVKTQIKSYLLQTLTSPVYEARSTSSQVIAKVAGIELPQKQWPELIGSLLSNIHQVPVHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASESSNDVRLAATRALYNALGFAQANFTNEMERDYI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035368`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035368

Location Chr08:21244996-21248754 (-)

Description Similar to KPNB1: Importin subunit beta-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g53480`	Acts as a negative effector of drought tolerance.	An Arabidopsis homolog of importin β1 is required for ABA response and drought tolerance.2013 · DOI: 10.1111/tpj.12207

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035368 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006404 RNA import into nucleus Biological Process

GO:0006606 protein import into nucleus Biological Process

GO:0006607 NLS-bearing protein import into nucleus Biological Process

GO:0006610 ribosomal protein import into nucleus Biological Process

GO:0007079 mitotic chromosome movement towards spindle pole Biological Process

GO:0007080 mitotic metaphase chromosome alignment Biological Process

GO:0030953 astral microtubule organization Biological Process

GO:0035332 positive regulation of hippo signaling Biological Process

GO:0040001 establishment of mitotic spindle localization Biological Process

GO:0045540 regulation of cholesterol biosynthetic process Biological Process

GO:0045542 positive regulation of cholesterol biosynthetic process Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT5G53480

hsa:3837

mmu:16211

rno:24917

xla:100137718

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.743

Rank 1 · LXL04_035368 · OH-1004

Cytoplasm0.596

Rank 2 · LXL04_035368 · OH-1004

Cell membrane0.044

Rank 3 · LXL04_035368 · OH-1004

Mitochondrion0.042

Rank 4 · LXL04_035368 · OH-1004

Lysosome / Vacuole0.036

Rank 5 · LXL04_035368 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03810.26IBN_N63-142 aa

PF23271.2HEAT_GCN1136-310 aa

PF13513.13HEAT_EZ422-478 aa

PF25574.2TPR_IMB1500-869 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035368	`PF03810.26`	IBN_N	63	142	1.7e-15	57.5
LXL04_035368	`PF23271.2`	HEAT_GCN1	136	310	1.5e-14	55.3
LXL04_035368	`PF13513.13`	HEAT_EZ	422	478	5e-25	88.2
LXL04_035368	`PF25574.2`	TPR_IMB1	500	869	1.1e-113	380.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FJD4`	Arabidopsis thaliana	Importin subunit beta-1	83.372%	Swiss-Prot	strong database homology

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