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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G389410
Reference: TK1151 Chr: Chr05 Coordinates: 96775982-96785923 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4380 bp · TkA05G389410|TK1151|cDNA

TTTTGTTCGTACCCTCTCTAGAATGAGAAGCAAATCGTTGTGGCAACTGTTCTTATGCCCTGGTTAAATGTGGAGAAGCTTGTCGTCGCCATGAAATACTAAATGGACATCTACTTAATCTGGAAACAATCTTCTCACAGAAAAAACCGGAGCGGTTATTGATCTCTCTCAGAACTAGGAATCAGCTCACCGGCAATCTGATGCTACACAATGTCGTTGATTCAAGGACCACCGATAGATTCGTCGGACTGCATGCTGCC...

CDS

Download CDS FASTA

3891 bp · TkA05G389410|TK1151|CDS

ATGTCGTTGATTCAAGGACCACCGATAGATTCGTCGGACTGCATGCTGCCGGGACCACCCTCCCGCAACAATGGTGGATCTGCTGACCTCATATCCACTGGCCTCCTCGCATATGCCGCCGGCAGCACCGTCCCTATCCTCGATATTCGCTCCATGCAACTGGTATGCGTTATTCCTATTCCTCCTCCTGCTGCCACCTCCGTCACCACCAACTCCTCCTCATCCTCCTCCTCCTCGTCATCATCACTGTCCCCTTATGT...

Protein

Download Protein FASTA

1296 aa · TkA05G389410|TK1151|PROTEIN

MSLIQGPPIDSSDCMLPGPPSRNNGGSADLISTGLLAYAAGSTVPILDIRSMQLVCVIPIPPPAATSVTTNSSSSSSSSSSSLSPYVTSVRWCPTPLHLDLLSNDLPSSHSHLLLAAGDRQGRICLLDLRQKSSPSLFLQTDQNSKLGIQDLCWIRTRSDSWIIAALMGPSLLSLFNITTGRCFFKYDASPELFSCIRRDPFDSRHLCAIGFKGLLLSIKVLGDVSESDVVLEELRIPTDVTELNRLEREVGIGVGSAGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G389410
TK1151 IDTkA05G389410
OH-1004 IDLXL04_021416
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G389410
LocationChr05:96775982-96785923 (+)
DescriptionSimilar to WDR11: WD repeat-containing protein 11
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021416 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0008589 regulation of smoothened signaling pathway Biological Process
GO:0035264 multicellular organism growth Biological Process
GO:0060271 cilium assembly Biological Process
GO:0099041 vesicle tethering to Golgi Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005765 lysosomal membrane Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0005814 centriole Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
dre:558865
hsa:55717
mmu:207425
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.502
Rank 1 · TkA05G389410 · TK1151
Nucleus0.318
Rank 2 · TkA05G389410 · TK1151
Golgi apparatus0.152
Rank 3 · TkA05G389410 · TK1151
Lysosome / Vacuole0.124
Rank 4 · TkA05G389410 · TK1151
Cell membrane0.090
Rank 5 · TkA05G389410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23751Beta-prop_WDR11_1st18-455 aa
PF23098Beta-prop_NOL10_N109-165 aa
PF29630ASA1110-133 aa
PF29037DSE1_N110-187 aa
PF25173Beta-prop_WDR3_1st111-135 aa
PF24807WD40_CDC20-Fz113-135 aa
PF24807WD40_CDC20-Fz113-157 aa
PF24814WD40_Prp19113-135 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G389410PF23751Beta-prop_WDR11_1st184552.1e-211703.4
TkA05G389410PF23098Beta-prop_NOL10_N1091650.0006619.6
TkA05G389410PF29630ASA11101330.07112.7
TkA05G389410PF29037DSE1_N1101870.07712.8
TkA05G389410PF25173Beta-prop_WDR3_1st1111354e-0627.4
TkA05G389410PF24807WD40_CDC20-Fz1131351.4e-0938.5
TkA05G389410PF24807WD40_CDC20-Fz1131571.4e-0938.5
TkA05G389410PF24814WD40_Prp191131350.0002620.9
TkA05G389410PF23381Beta-prop_IFT122_1st1141840.0009419.3
TkA05G389410PF23775Beta-prop_RIG_2nd1141540.04413.9
TkA05G389410PF24782WD40_MABP1-WDR62_2nd1141310.05913.0
TkA05G389410PF12894ANAPC4_WD401151975.1e-0524.1
TkA05G389410PF25174Beta-prop_THOC31152010.006516.2
TkA05G389410PF25171Beta-prop_WDR36-Utp21_1st1192125.3e-0523.5
TkA05G389410PF25174Beta-prop_THOC32663510.006516.2
TkA05G389410PF23775Beta-prop_RIG_2nd2663010.04413.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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