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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G388540
Reference: TK1151 Chr: Chr05 Coordinates: 96556953-96558421 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1397 bp · TkA05G388540|TK1151|cDNA

CGACATTATGGCAACCAGAGCATGACACTCTGAACCTTCCTTATGTGTTCTTCATTTCCTAATTTACTTATCGTCCTTCATAGAATCCGACTCTGTTCTTAAATTCATGCAATTTCAAGAAACACCCCCATTTCGATCTCTCTCAGTTAATTATCATCAGTTTATGAGCTCTGTTTTTTGACTTCCGGCTCCAATTCATTCAGCTCCACTCCAATTTGGTTAACTCTTTGCTGTAACACCATCGAATTCCAAGATTGTTC...

CDS

Download CDS FASTA

918 bp · TkA05G388540|TK1151|CDS

ATGGGTTATATAAGTACAATTTTTATCGCTACGATTGTAACAGTTAGCATCGTTGGAGTTTACGTCAACGGAGAGGAAGGTGAATACGAAGATGCTGGAGTTGAAGCTCCCATGGTGAAAACAGAGCAAGAAGCTTTGTACTCTGCTATCCAAGGTTTTGTGGGTAAATGGTGGAATGGCTCAGATCTTTATCCCGATCCTTGTGGTTGGACTCCTATTCAGGGAGTTTCGTGTGACATTTACGATGGATTCTGGTATGT...

Protein

Download Protein FASTA

305 aa · TkA05G388540|TK1151|PROTEIN

MGYISTIFIATIVTVSIVGVYVNGEEGEYEDAGVEAPMVKTEQEALYSAIQGFVGKWWNGSDLYPDPCGWTPIQGVSCDIYDGFWYVTGLNIGSIQYNSLACASNPEIRSSLFLLTHLKSLAFFDCFHTPPIVISSENWTLLSGSLESLEFRSNLGLTGAIPAAFSHLHKLQSLVVIGNGFSGGLPANIGNLTHLRRLVLSENGFSGEIGDDYGNLSELLILDLSRNSLSGSIPLTFGGLTSLLKLDLSQNQLVGKIPNE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G388540
TK1151 IDTkA05G388540
OH-1004 IDLXL04_021412
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)99.400
Protein coverage (%)TK1151 59.344 / OH-1004 38.841
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G388540
LocationChr05:96556953-96558421 (+)
DescriptionSimilar to PII-2: Piriformospora indica-insensitive protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g13230 Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica.
A leucine-rich repeat protein is required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis thaliana.2007 · DOI: 10.1111/j.1365-313x.2007.03028.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021412 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0008356 asymmetric cell division Biological Process
GO:0009610 response to symbiotic fungus Biological Process
GO:0009611 response to wounding Biological Process
GO:0009620 response to fungus Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0010090 trichome morphogenesis Biological Process
GO:0010375 stomatal complex patterning Biological Process
GO:0010376 stomatal complex formation Biological Process
GO:0042659 regulation of cell fate specification Biological Process
GO:0044403 biological process involved in symbiotic interaction Biological Process
GO:0045087 innate immune response Biological Process
KEGG gene cross-reference
ath:AT1G13230
ath:AT1G80080
ath:AT2G42800
ath:AT4G20140
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.646
Rank 1 · TkA05G388540 · TK1151
Endoplasmic reticulum0.123
Rank 2 · TkA05G388540 · TK1151
Lysosome / Vacuole0.073
Rank 3 · TkA05G388540 · TK1151
Cytoplasm0.065
Rank 4 · TkA05G388540 · TK1151
Plastid0.053
Rank 5 · TkA05G388540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12799LRR_4103-126 aa
PF13855LRR_8110-121 aa
PF23598LRR_14110-175 aa
PF25013LRR_Zer-1115-125 aa
PF13516LRR_6116-126 aa
PF00560LRR_1145-168 aa
PF13855LRR_8145-179 aa
PF12799LRR_4145-179 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G388540PF12799LRR_41031268.5e-1348.8
TkA05G388540PF13855LRR_81101217.7e-1658.3
TkA05G388540PF23598LRR_141101754.3e-1246.2
TkA05G388540PF25013LRR_Zer-11151250.001519.4
TkA05G388540PF13516LRR_61161260.0001122.6
TkA05G388540PF00560LRR_11451681.1e-1761.0
TkA05G388540PF13855LRR_81451797.7e-1658.3
TkA05G388540PF12799LRR_41451798.5e-1348.8
TkA05G388540PF13516LRR_61451540.0001122.6
TkA05G388540PF24758LRR_At5g563701572030.01116.1
TkA05G388540PF13516LRR_61671810.0001122.6
TkA05G388540PF25013LRR_Zer-11672020.001519.4
TkA05G388540PF24758LRR_At5g563701682300.01116.1
TkA05G388540PF00560LRR_11701921.1e-1761.0
TkA05G388540PF29252LRR_NLRC41792030.1112.4
TkA05G388540PF12799LRR_41862048.5e-1348.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5PP26Arabidopsis thalianasp|Q5PP26|PII2_ARATH Piriformospora indica-insensitive protein 260.900%Swiss-ProtMedium

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