TkA05G386440 | RubberDandelionOmics

Gene overview

TkA05G386440

Reference: TK1151 Chr: Chr05 Coordinates: 96043924-96046152 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1066 bp · TkA05G386440|TK1151|cDNA

AAATATCAAACTTTTTTTTTCTGGGTAATTAAATTTGATTAAAGATTGGATTCTTGTTGTTGCTTTTAGGATTTGTTGTCGAACAAACTGGTGGCTATGGAGACAAGCAGAAATGGGTATGGTGCTTTTCATCCTTTTACTAAACCGGCGGTGGTTGCAAACGCCGCCAACAGTTGTTCAGCGGAGACAGATGGTGGCGGTGGCAGTGGCAGTAAAGGTGAAGATAAAGGATTATATAATAAGAAAGAAAGGAGGTGTTG...

CDS

Download CDS FASTA

1086 bp · TkA05G386440|TK1151|CDS

ATGGTTACTTACAATAATCCAAGTGATTACACAGAAAAAATGGAGAAATGTCGAGAATATATGGAAGCTTTAGAAGAAGAACGTAGAAAGATTCGAGTATTCGAACGTGAGCTTCCTCTTTGTCATGAACTTGTCTCTCAAGCGATTGAAAGATGCAGAGAGCAAATGTCGGGGAAGATGATGGATTGCTTTAATGGTGAATTTGATCAGTATTCTGAGCAAACATCCAGTGAGGGTCCCGTTTTGGAAGAGTTTATTCC...

Protein

Download Protein FASTA

361 aa · TkA05G386440|TK1151|PROTEIN

MVTYNNPSDYTEKMEKCREYMEALEEERRKIRVFERELPLCHELVSQAIERCREQMSGKMMDCFNGEFDQYSEQTSSEGPVLEEFIPIKRASSTNDDDVDYGQQKQQLSHNSKIIYSIDKSSQISTKSDWLTSTQLSIKTPDPHIEQDLLSNKLVAMETSRNGYGAFHPFTKPAVVANAANSCSAETDGGGGSGSKGEDKGLYNKKERRCWSPELHRRFLHALQQLGGAHIATPKQIKELMKVDGLTNDEIKSHLQKYRL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G386440`
TK1151 ID	TkA05G386440
OH-1004 ID	LXL04_021397
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G386440

Location Chr05:96043924-96046152 (-)

Description Similar to HHO3: Transcription factor HHO3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68670`	Probable transcription factor involved in phosphate homeostasis.	Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.2016 · DOI: 10.1093/pcp/pcw063
`At1g25550`	Probable transcription factor involved in phosphate signaling in roots.	No verified direct reference in this release
`At1g13300`	Transcription factor involved in nitrate and phosphate signaling in roots.	Overexpressing HRS1 confers hypersensitivity to low phosphate-elicited inhibition of primary root growth in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1744-7909.2009.00819.x HRS1 acts as a negative regulator of abscisic acid signaling to promote timely germination of Arabidopsis seeds.2012 · DOI: 10.1371/journal.pone.0035764 AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip.2015 · DOI: 10.1038/ncomms7274
`At3g25790`	Probable factor involved in nitrate and phosphate signaling in roots.	No verified direct reference in this release
`At2g03500`	Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0325600`	Transcriptional repressor that may play a role in response to nitrogen.	No verified direct reference in this release
`Os01g0176700`	Probable transcription factor that may play a role in regulatory networks controlling development and metabolism.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021397 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0032107 regulation of response to nutrient levels Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0055062 phosphate ion homeostasis Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0080022 primary root development Biological Process

GO:0090548 response to nitrate starvation Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G13300

ath:AT1G25550

ath:AT1G68670

ath:AT3G25790

dosa:Os02g0325600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.966

Rank 1 · TkA05G386440 · TK1151

Cytoplasm0.104

Rank 2 · TkA05G386440 · TK1151

Cell membrane0.025

Rank 3 · TkA05G386440 · TK1151

Endoplasmic reticulum0.012

Rank 4 · TkA05G386440 · TK1151

Plastid0.010

Rank 5 · TkA05G386440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26575HHO5_N9-56 aa

PF00249Myb_DNA-binding208-259 aa

PF17014Mad3_BUB1_I_2240-287 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G386440	`PF26575`	HHO5_N	9	56	6.7e-15	55.6
TkA05G386440	`PF00249`	Myb_DNA-binding	208	259	1.1e-07	32.6
TkA05G386440	`PF17014`	Mad3_BUB1_I_2	240	287	0.18	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VZS3`	Arabidopsis thaliana	sp\|Q8VZS3\|HHO2_ARATH Transcription factor HHO2	44.800%	Swiss-Prot	Medium
`Q9FPE8`	Arabidopsis thaliana	sp\|Q9FPE8\|HHO3_ARATH Transcription factor HHO3	42.800%	Swiss-Prot	Medium
`Q9FX67`	Arabidopsis thaliana	sp\|Q9FX67\|HRS1_ARATH Transcription factor HRS1	45.300%	Swiss-Prot	Medium
`Q9LS00`	Arabidopsis thaliana	sp\|Q9LS00\|HHO1_ARATH Transcription factor HHO1	42.600%	Swiss-Prot	Medium
`Q9ZQ85`	Arabidopsis thaliana	sp\|Q9ZQ85\|EFM_ARATH Myb family transcription factor EFM	66.200%	Swiss-Prot	Low
`Q6Z869`	Oryza sativa subsp. japonica	sp\|Q6Z869\|NIGT1_ORYSJ Transcription factor NIGT1	39.700%	Swiss-Prot	Medium
`Q5VRW2`	Oryza sativa subsp. japonica	sp\|Q5VRW2\|NOH1_ORYSJ Transcription factor NIGTH1	71.600%	Swiss-Prot	Low

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