TkA05G385690 | RubberDandelionOmics

Gene overview

TkA05G385690

Reference: TK1151 Chr: Chr05 Coordinates: 95838427-95841446 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1740 bp · TkA05G385690|TK1151|cDNA

TTCAAGTGAACCAAATGGAATATGGGGTTAGTTGAGGGAGTAGACCAACGAACTGGGATGACATGGCCAATGTTTGGGCGATGTTTACAGTGCTCCCCGTTGCTCATATCCTCGTCTTCTCCGCCTCACTCTCTTTCCATTCCTATATCTCTCTCATTTCTCCCCCAAATCCACCATCTACCTATCTCTCTCTATCTCTGCAATGTCTTCTTCACTTCTGCAATCTAGGGCTCCCCCAGCTCTATCCTTCTCTTCCTCCA...

CDS

Download CDS FASTA

1434 bp · TkA05G385690|TK1151|CDS

ATGTCTTCTTCACTTCTGCAATCTAGGGCTCCCCCAGCTCTATCCTTCTCTTCCTCCATCTCCGCAGCCAATACTCACTGGCGCTTTACATCCTCCCCCGCCGTTACATTCACTCGCCGCACAAAGAATTTCACCGTCCATGCTAAAATCAGAGAGATTTTCATGCCTGCACTCAGCTCCACCATGACTGAGGGCAAGATCGTCTCATGGATCAAATCCGAAGGCGATGTGCTCTCTAAAGGGGAGTCTGTTGTCGTCGT...

Protein

Download Protein FASTA

477 aa · TkA05G385690|TK1151|PROTEIN

MSSSLLQSRAPPALSFSSSISAANTHWRFTSSPAVTFTRRTKNFTVHAKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAPIGLLAETEAEIEEAKVKAASAGSSAPPTPAASAPSPPPPPAPVAAAPTPAAAPVAADGPRKIVSTPFAKKLAKQHKVDINKVVGTGPFGRITPADVEAAGGIKPEKVTAVPATAAPPAAAAAPAKSAPTFAEIPGATIVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G385690`
TK1151 ID	TkA05G385690
OH-1004 ID	LXL04_021386
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.000
Protein coverage (%)	TK1151 100.000 / OH-1004 91.731 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G385690

Location Chr05:95838427-95841446 (+)

Description Similar to LTA2: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g25860`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release
`At1g34430`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021386 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process

GO:0006096 glycolytic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0045254 pyruvate dehydrogenase complex Cellular Component

GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity Molecular Function

GO:0019904 protein domain specific binding Molecular Function

KEGG gene cross-reference

ath:AT1G34430

ath:AT3G25860

rbe:RBE_0300

rco:RC0764

rfe:RF_0761

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.922

Rank 1 · TkA05G385690 · TK1151

Mitochondrion0.121

Rank 2 · TkA05G385690 · TK1151

Cytoplasm0.031

Rank 3 · TkA05G385690 · TK1151

Peroxisome0.015

Rank 4 · TkA05G385690 · TK1151

Nucleus0.014

Rank 5 · TkA05G385690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00364Biotin_lipoyl52-122 aa

PF25997BSH_YhbJ62-104 aa

PF02817E3_binding183-217 aa

PF001982-oxoacid_dh257-476 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G385690	`PF00364`	Biotin_lipoyl	52	122	2e-15	57.1
TkA05G385690	`PF25997`	BSH_YhbJ	62	104	0.0047	17.7
TkA05G385690	`PF02817`	E3_binding	183	217	5.8e-13	49.5
TkA05G385690	`PF00198`	2-oxoacid_dh	257	476	9.7e-63	212.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SQI8`	Arabidopsis thaliana	sp\|Q9SQI8\|ODP24_ARATH Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic	78.300%	Swiss-Prot	High
`Q9C8P0`	Arabidopsis thaliana	sp\|Q9C8P0\|ODP25_ARATH Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic	63.600%	Swiss-Prot	High

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