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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G381940
Reference: TK1151 Chr: Chr05 Coordinates: 94866983-94873178 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3960 bp · TkA05G381940|TK1151|cDNA

TTCCCATCTTCGTTACATTCGTACTTTTCTCTCCACAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAAAACAAGAGAGAGAAAATTGCGAAATTGTTGTTGATGATACGGGAACATCTAGGGTTTGTGAAATCTGAATCAGATTACATCAATTGATTTTGAATTTTGGAGGTTTTCCTTGTATAAAATGGCGACGCCATTGACCGGATTGCAACACCGGGACGTTGGAGGTGGTGGTGTGGCTGTGATGGCGGCTTCC...

CDS

Download CDS FASTA

3492 bp · TkA05G381940|TK1151|CDS

ATGGCGACGCCATTGACCGGATTGCAACACCGGGACGTTGGAGGTGGTGGTGTGGCTGTGATGGCGGCTTCCGGAGGAGGGGCGGTCAACCAGATGGATCCGTCCAGTAGTAACAAATCATCCAAAAAACAAAGTTCTCCAATTCATATCTTCTTAATCTTTCATAAAGCCATTCGGTCGGAGCTCGATGCCCTACACCGGTCTGCCATTGCTTTTGCTACTAATACTCATGTGGAAATTGAGCCTTTGCTCAAGCGCTA...

Protein

Download Protein FASTA

1163 aa · TkA05G381940|TK1151|PROTEIN

MATPLTGLQHRDVGGGGVAVMAASGGGAVNQMDPSSSNKSSKKQSSPIHIFLIFHKAIRSELDALHRSAIAFATNTHVEIEPLLKRYHFLRSIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHEGESVIFDQLFTLLDSDMQNEESFRRELASCTGALQTSISQHMSKEEEQVFPLLVEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSASVSSDERHEMRNCLCKVIPDEKLLQQIIFTWMDGSHGTHGVKKRKNSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G381940
TK1151 IDTkA05G381940
OH-1004 IDLXL04_021348
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G381940
LocationChr05:94866983-94873178 (+)
DescriptionSimilar to BTS: Zinc finger protein BRUTUS
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18290 Essential protein. No verified direct reference in this release
At1g74770 Probable E3 ubiquitin-protein ligase that may regulate the response to iron deficiency and thus contributes to iron homeostasis. No verified direct reference in this release
At1g18910 Probable E3 ubiquitin-protein ligase that may regulate the response to iron deficiency and thus contributes to iron homeostasis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021348 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006879 intracellular iron ion homeostasis Biological Process
GO:0010039 response to iron ion Biological Process
GO:0010106 cellular response to iron ion starvation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0033212 iron import into cell Biological Process
GO:0034756 regulation of iron ion transport Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0060586 multicellular organismal-level iron ion homeostasis Biological Process
GO:0071282 cellular response to iron(II) ion Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0098711 iron ion import across plasma membrane Biological Process
KEGG gene cross-reference
ath:AT1G18910
ath:AT1G74770
ath:AT3G18290
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.523
Rank 1 · TkA05G381940 · TK1151
Nucleus0.362
Rank 2 · TkA05G381940 · TK1151
Cell membrane0.209
Rank 3 · TkA05G381940 · TK1151
Golgi apparatus0.087
Rank 4 · TkA05G381940 · TK1151
Lysosome / Vacuole0.068
Rank 5 · TkA05G381940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01814Hemerythrin47-178 aa
PF05041Pecanex_C78-116 aa
PF18787CRM1_repeat_3162-175 aa
PF01814Hemerythrin288-420 aa
PF05041Pecanex_C343-381 aa
PF18787CRM1_repeat_3454-466 aa
PF01814Hemerythrin590-735 aa
PF05041Pecanex_C644-688 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G381940PF01814Hemerythrin471781.6e-2590.7
TkA05G381940PF05041Pecanex_C781160.09112.9
TkA05G381940PF18787CRM1_repeat_31621750.2911.9
TkA05G381940PF01814Hemerythrin2884201.6e-2590.7
TkA05G381940PF05041Pecanex_C3433810.09112.9
TkA05G381940PF18787CRM1_repeat_34544660.2911.9
TkA05G381940PF01814Hemerythrin5907351.6e-2590.7
TkA05G381940PF05041Pecanex_C6446880.09112.9
TkA05G381940PF18787CRM1_repeat_36646930.2911.9
TkA05G381940PF01814Hemerythrin6857371.6e-2590.7
TkA05G381940PF13639zf-RING_29169401.2e-0629.4
TkA05G381940PF05495zf-CHY9179851.6e-1867.6
TkA05G381940PF13639zf-RING_29179621.2e-0629.4
TkA05G381940PF13639zf-RING_295810061.2e-0629.4
TkA05G381940PF14599zinc_ribbon_69729904.4e-2484.9
TkA05G381940PF05495zf-CHY101710431.6e-1867.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LPQ5Arabidopsis thalianasp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS64.200%Swiss-ProtHigh
F4HVS0Arabidopsis thalianasp|F4HVS0|BTSL2_ARATH Zinc finger protein BRUTUS-like At1g7477037.600%Swiss-ProtMedium
F4IDY5Arabidopsis thalianasp|F4IDY5|BTSL1_ARATH Zinc finger protein BRUTUS-like At1g1891038.100%Swiss-ProtMedium

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