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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G378680
Reference: TK1151 Chr: Chr05 Coordinates: 94066943-94074692 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6434 bp · TkA05G378680|TK1151|cDNA

AATCGATCTCCCCATCGAACCGACTTTAAAGTTTAGCCTTTTTTTTCTTCAAAGCGTCTCATCTCCCTCCAAAATCATTTTCTCTACTTATTCTAGGGTTAGGGTTTTGTTGATTTCCTATTTCCCTCTGCATGATATCCATTCGTCTTCTCCATCAACAGATCTTTGATCTCTACCGGAAAGTATGACGTTGTTCTTGTCCGACGAAGAGTACGCTCGCTGCTCCCACGACCCTTCTTTGATTGCGCAGAAAGCCGATG...

CDS

Download CDS FASTA

5829 bp · TkA05G378680|TK1151|CDS

ATGACGTTGTTCTTGTCCGACGAAGAGTACGCTCGCTGCTCCCACGACCCTTCTTTGATTGCGCAGAAAGCCGATGCCTATATCAGAGAACTCTACAATCAACTCGAGACTGAAAAAGCCCAATACGATGCTTCCTCCATAACCGCCGAACAGACTTGCTCGATTCTCGAGCAAAAATATGTTTCTCTCAAATCTGAATTTACTGCGCTTCAATCGCAGCACTCGCAGCTCAATTCCACTCTCGAGGAACGTGTCTCTGA...

Protein

Download Protein FASTA

1942 aa · TkA05G378680|TK1151|PROTEIN

MTLFLSDEEYARCSHDPSLIAQKADAYIRELYNQLETEKAQYDASSITAEQTCSILEQKYVSLKSEFTALQSQHSQLNSTLEERVSELAQIQADKHQIYLQSIGKDGEIERLSLEASELQKSKSQLLQMIEHKDLEISEKNTSIKGYLDKIVSLTENTSSKESRTRELEAELARVHTSLARLSQEKELVERHNVWLNDELTTKVNNLLELRKSHNELEADMTSKLADLERKYNDTCTSLKWKDDRVKELQSKLEALQEEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G378680
TK1151 IDTkA05G378680
OH-1004 IDLXL04_021306
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.300
Protein coverage (%)TK1151 98.610 / OH-1004 98.595
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G378680
LocationChr05:94066943-94074692 (+)
DescriptionSimilar to NUA: Nuclear-pore anchor
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g79280 Component of the nuclear pore complex. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021306 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006404 RNA import into nucleus Biological Process
GO:0006405 RNA export from nucleus Biological Process
GO:0006406 mRNA export from nucleus Biological Process
GO:0006606 protein import into nucleus Biological Process
GO:0006611 protein export from nucleus Biological Process
GO:0006913 nucleocytoplasmic transport Biological Process
GO:0006999 nuclear pore organization Biological Process
GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process
GO:0009910 negative regulation of flower development Biological Process
GO:0010965 regulation of mitotic sister chromatid separation Biological Process
GO:0016973 poly(A)+ mRNA export from nucleus Biological Process
KEGG gene cross-reference
ath:AT1G79280
cthr:CTHT_0041070
hsa:7175
mmu:108989
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.695
Rank 1 · TkA05G378680 · TK1151
Cytoplasm0.264
Rank 2 · TkA05G378680 · TK1151
Golgi apparatus0.046
Rank 3 · TkA05G378680 · TK1151
Cell membrane0.030
Rank 4 · TkA05G378680 · TK1151
Endoplasmic reticulum0.021
Rank 5 · TkA05G378680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07926TPR_MLP1_222-83 aa
PF12325TMF_TATA_bd30-94 aa
PF02016Peptidase_S6648-97 aa
PF25785TPR52-95 aa
PF06005ZapB59-96 aa
PF25481Nucleoprot-TPR62-99 aa
PF12325TMF_TATA_bd62-139 aa
PF06005ZapB108-141 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G378680PF07926TPR_MLP1_222835e-2588.7
TkA05G378680PF12325TMF_TATA_bd30940.01316.3
TkA05G378680PF02016Peptidase_S6648972.39.1
TkA05G378680PF25785TPR52952.3e-2486.5
TkA05G378680PF06005ZapB59960.003718.4
TkA05G378680PF25481Nucleoprot-TPR62996e-2278.2
TkA05G378680PF12325TMF_TATA_bd621390.01316.3
TkA05G378680PF06005ZapB1081410.003718.4
TkA05G378680PF21928XLF_CC1161376.57.4
TkA05G378680PF07926TPR_MLP1_21362355e-2588.7
TkA05G378680PF06005ZapB1421920.003718.4
TkA05G378680PF12325TMF_TATA_bd1632580.01316.3
TkA05G378680PF25481Nucleoprot-TPR1702496e-2278.2
TkA05G378680PF02016Peptidase_S661852352.39.1
TkA05G378680PF25785TPR2202922.3e-2486.5
TkA05G378680PF06005ZapB2252810.003718.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A4GSN8Arabidopsis thalianasp|A4GSN8|NUA_ARATH Nuclear-pore anchor53.000%Swiss-ProtHigh

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