Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1549 bp · TkA05G375880|TK1151|cDNA
CCTTTACCACTAGAAAAAACCCAACAACTACCAATTGCTTCCGCCACAACCATCTACCACCATCTTAGTACATATTGACCTGTTTTATGATTTTGCATTTGAAACTCAATAGTTGTTTATATATGTTGTTTAGTTGGGTTTTTTTTCCAGATCTTGGAGCAAGTATGTAGTTATCGGTTGTGAAAGGATATGGCATCTTTTTCTCCAGGTTGTGAAAGGAGATGGTATCCTTTTCTCCAAGACTCTAATTCTGCAGGATT...
633 bp · TkA05G375880|TK1151|CDS
ATGGGTGATCATTTCGTCTTTCTGGTTGATCGGTTGCTCACCGAATCCACTTTAGAGGCTGCAATCGAAAGCAGAAACCCTTCATATCCTTTATCCCCCGCCATCGACACCATGATTGATTGTTCTTCTCATATGGATCCTCAAACTCCTTTCACCCCAAGGAAAATGGTGGAATGCAGAATATGCCAGGATGAGGATTTTGATTCGACTATGGAGACTCCTTGCTCTTGTTGTGGTAGCTTGAAGTATGCTCATCGCCG...
Protein
Download Protein FASTA210 aa · TkA05G375880|TK1151|PROTEIN
MGDHFVFLVDRLLTESTLEAAIESRNPSYPLSPAIDTMIDCSSHMDPQTPFTPRKMVECRICQDEDFDSTMETPCSCCGSLKYAHRRCVQRWCNEKGDIICEICHQQFRPGYTAPPPVFRLGGIPANLRGHWQIARRDINADPRIITVVSSDHNLLDQEYDEYADSTARSILCFRSVAVIFMIVLILRHTLPILQMEGQITHYRCFCCYS
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G375880 |
|---|---|
| TK1151 ID | TkA05G375880 |
| OH-1004 ID | LXL04_021283 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 98.000 |
| Protein coverage (%) | TK1151 94.286 / OH-1004 74.717Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G375880 |
|---|---|
| Location | Chr05:93318923-93322395 (-) |
| Description | Similar to MARCHF3: E3 ubiquitin-protein ligase MARCHF3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000209 protein polyubiquitination Biological Process GO:0002495 antigen processing and presentation of peptide antigen via MHC class II Biological Process GO:0006897 endocytosis Biological Process GO:0006955 immune response Biological Process GO:0016567 protein ubiquitination Biological Process GO:0005737 cytoplasm Cellular Component GO:0005764 lysosome Cellular Component GO:0005765 lysosomal membrane Cellular Component GO:0005768 endosome Cellular Component GO:0031901 early endosome membrane Cellular Component GO:0031902 late endosome membrane Cellular Component GO:0004842 ubiquitin-protein transferase activity Molecular Function |
| KEGG gene cross-reference | bta:520348 hsa:115123 mmu:320253 rno:364878 xla:495072 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05290Baculo_IE-145-109 aaPF12906RINGv59-104 aaPF12428DUF3675110-199 aaPF05290Baculo_IE-1195-208 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G375880 | PF05290 | Baculo_IE-1 | 45 | 109 | 0.02 | 15.6 |
| TkA05G375880 | PF12906 | RINGv | 59 | 104 | 1e-11 | 45.5 |
| TkA05G375880 | PF12428 | DUF3675 | 110 | 199 | 1.7e-26 | 93.8 |
| TkA05G375880 | PF05290 | Baculo_IE-1 | 195 | 208 | 0.02 | 15.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.