TkA05G333920 | RubberDandelionOmics

Gene overview

TkA05G333920

Reference: TK1151 Chr: Chr05 Coordinates: 82253046-82258279 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2329 bp · TkA05G333920|TK1151|cDNA

CGCGAATCTAGACATTCATTCGCATCCCGCCGCAGGAGCTTCAATCTCCATCGCCGCCGACCACTTCCATCTCCTCCGGCCACCAGCGCTTCACCGTCGGGCACCAGCGCTTCACCGTCTCCGATTTTGCGCCGTCGCAACTCGCACGCAGACCACAGACGACAAGGTCATTTTGCAAATTGACCTTCTGATTTTTCGGAAGCCATTCACGTTACCTTCTGTGCTCGCCCCTGCTGTTGCCTTCCCCAACCAGGGCTCAC...

CDS

Download CDS FASTA

1140 bp · TkA05G333920|TK1151|CDS

ATGATTCTTCAACGTTCGATTCCTATTCTCAGTTTCTGCAAATCAACTTCATTATCATCCTCCCCCAAATTCCTCTTCTTACCTTTCAACTCACCACCACAAACATTTCGTTTCCACCACCACCACCACCACCACCGCAGCCAAATCAGGGCCTTTACCGCCACCACCACCACCACCACCACCACAGATGAAAAGGAAACCGATACCTTCTTTGCAGACGACACTGTTTCCTGGACATCCCTTGGGGTTGTTGACAGACT...

Protein

Download Protein FASTA

379 aa · TkA05G333920|TK1151|PROTEIN

MILQRSIPILSFCKSTSLSSSPKFLFLPFNSPPQTFRFHHHHHHHRSQIRAFTATTTTTTTTDEKETDTFFADDTVSWTSLGVVDRLSQSLSRIGLNRPSLIQALSIPPILHGHDVVVAAETGSGKTHGYLVPLFHNLSTTIETVNRPHKSLVLCPNVMLCEQVVRMANYICNDNGEPLLRVAAVCGRQGWPVNEPNIIVSTPAALLNYLHAIDPERRRRADFIRDVKHVVFDEADMLLCGSFQNQVIRLINMFRFDEKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G333920`
TK1151 ID	TkA05G333920
OH-1004 ID	LXL04_020951
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.100
Protein coverage (%)	TK1151 98.945 / OH-1004 66.132 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G333920

Location Chr05:82253046-82258279 (-)

Description Similar to RH22: DEAD-box ATP-dependent RNA helicase 22

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g59990`	DEAD-box ATP-dependent RNA helicase 22.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0383400`	DEAD-box ATP-dependent RNA helicase 22.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020951 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0006364 rRNA processing Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0071013 catalytic step 2 spliceosome Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003724 RNA helicase activity Molecular Function

GO:0003729 mRNA binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

KEGG gene cross-reference

ath:AT1G59990

cnb:CNBL0260

cne:CNH00280

dosa:Os03g0708600

dosa:Os09g0383400

osa:4333866

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.530

Rank 1 · TkA05G333920 · TK1151

Mitochondrion0.261

Rank 2 · TkA05G333920 · TK1151

Nucleus0.138

Rank 3 · TkA05G333920 · TK1151

Cytoplasm0.025

Rank 4 · TkA05G333920 · TK1151

Cell membrane0.009

Rank 5 · TkA05G333920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00270DEAD45-58 aa

PF00270DEAD102-255 aa

PF04851ResIII114-235 aa

PF00270DEAD323-350 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G333920	`PF00270`	DEAD	45	58	3.9e-25	89.2
TkA05G333920	`PF00270`	DEAD	102	255	3.9e-25	89.2
TkA05G333920	`PF04851`	ResIII	114	235	0.023	15.3
TkA05G333920	`PF00270`	DEAD	323	350	3.9e-25	89.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q944S1`	Arabidopsis thaliana	sp\|Q944S1\|RH22_ARATH DEAD-box ATP-dependent RNA helicase 22	54.600%	Swiss-Prot	High
`Q6H601`	Oryza sativa subsp. japonica	sp\|Q6H601\|RH22_ORYSJ DEAD-box ATP-dependent RNA helicase 22	55.000%	Swiss-Prot	High

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