TkA05G315960 | RubberDandelionOmics

Gene overview

TkA05G315960

Reference: TK1151 Chr: Chr05 Coordinates: 77964577-77973700 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4717 bp · TkA05G315960|TK1151|cDNA

CTTTGCTAAATAATACTCCCTCCGCTCGCTTCAACCTCCATCACCCATCTCTCTTTTCGAGATATACACACTTGCATATCCCTATAAGTCTGATCGGAGGTAAGATCTTATCGAAATTCAGACATAATTCGCTTCTTATTCGACAATCTCACAGCCAATTAAGCGACATTTCGGTGTTCTTATAGTTGATCTCACGTTAATTTTCTGTTCTTTTTGATTAATCACTTTATTCTGTATTGAATATACACGTGACATTGAGG...

CDS

Download CDS FASTA

1737 bp · TkA05G315960|TK1151|CDS

ATGTATCTAATCACGCTTCTTCTCGAGAACCTCATACTCTCATCAGACAACAATGAGGACCTTATCTATTGCTTAAAGGGATGGAACCAAGCACTAGGCATGTTGGAGACTGGAGATGGTAGTTGGGCATTATTTGCAAAATCAGTCCTTGATAGAACGCGACTTGCACTTGCAACCAAGGGCGAGTTTTATCATCAAATATTGCAACCTTCAGCAGAGTACCTCGGGGCCCGCCTTGGATTAGACCAATGGGCGGTAAG...

Protein

Download Protein FASTA

578 aa · TkA05G315960|TK1151|PROTEIN

MYLITLLLENLILSSDNNEDLIYCLKGWNQALGMLETGDGSWALFAKSVLDRTRLALATKGEFYHQILQPSAEYLGARLGLDQWAVSIFTEEMIRAGSAAPLSSLVNRLDSFLRNVANLGSWQVISPIEAVGYVVVVDELLSVQNKSYESPTILVAKSVRGEEEIPDGTVAVITPDMPDVLSHVSVRARNSKVCFATCFDPNILDDLRSKEGKLLKLKPTSADITYSEVKEGDLKQLSGLEEVGLPSGIKLVKKEFAGKF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G315960`
TK1151 ID	TkA05G315960
OH-1004 ID	LXL04_020846
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 48.818 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G315960

Location Chr05:77964577-77973700 (-)

Description Similar to R1: Alpha-glucan water dikinase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10760`	Mediates the incorporation of phosphate into starch-like alpha-glucan, mostly at the C-6 position of glucose units.	The Arabidopsis sex1 mutant is defective in the R1 protein, a general regulator of starch degradation in plants, and not in the chloroplast hexose transporter.2001 · DOI: 10.1105/tpc.010091
`At4g24450`	Mediates the incorporation of phosphate into alpha-glucan, mostly at the C-6 position of glucose units.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0297500`	Mediates the incorporation of phosphate into starch-like phospho-alpha-glucan, mostly at the C-3 position of glucose units.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020846 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005982 starch metabolic process Biological Process

GO:0005983 starch catabolic process Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009631 cold acclimation Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0004673 protein histidine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ag:CAA70725

ath:AT1G10760

ath:AT4G24450

dosa:Os12g0297500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.487

Rank 1 · TkA05G315960 · TK1151

Plastid0.152

Rank 2 · TkA05G315960 · TK1151

Nucleus0.140

Rank 3 · TkA05G315960 · TK1151

Peroxisome0.139

Rank 4 · TkA05G315960 · TK1151

Golgi apparatus0.102

Rank 5 · TkA05G315960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22973GWD1_pHisD121-233 aa

PF01326PPDK_N270-358 aa

PF01326PPDK_N375-452 aa

PF01326PPDK_N488-513 aa

PF01326PPDK_N534-577 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G315960	`PF22973`	GWD1_pHisD	121	233	5.2e-54	181.5
TkA05G315960	`PF01326`	PPDK_N	270	358	3.9e-27	96.1
TkA05G315960	`PF01326`	PPDK_N	375	452	3.9e-27	96.1
TkA05G315960	`PF01326`	PPDK_N	488	513	3.9e-27	96.1
TkA05G315960	`PF01326`	PPDK_N	534	577	3.9e-27	96.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SAC6`	Arabidopsis thaliana	sp\|Q9SAC6\|GWD1_ARATH Alpha-glucan water dikinase 1, chloroplastic	76.300%	Swiss-Prot	High
`Q9STV0`	Arabidopsis thaliana	sp\|Q9STV0\|GWD2_ARATH Alpha-glucan water dikinase 2	56.700%	Swiss-Prot	High
`Q2QTC2`	Oryza sativa subsp. japonica	sp\|Q2QTC2\|PWD_ORYSJ Phosphoglucan, water dikinase, chloroplastic	28.500%	Swiss-Prot	Low

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