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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G312990
Reference: TK1151 Chr: Chr05 Coordinates: 77240139-77241849 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1563 bp · TkA05G312990|TK1151|cDNA

ATGTATAGAGCTCTTGGTAGAACTCGGCTCATATACCGTTCCCTCATATCAAACTACGTCAAAACTGGTCTCATAGACAAAGCCCTCCAAGTGTTCGACGAAATGTCCCAATCAGATTGCCGAGTTTTCAGCATCGACTACAACCGTATCATTGGCATTTTGGTATGCCATTCACGTTTCGAATTAGTCGAACTGTACTACGATGCCATGGTTCCAAAAGGTTATTCTTTAAACTCATTCACATACTCAAGGTTCATATG...

CDS

Download CDS FASTA

1563 bp · TkA05G312990|TK1151|CDS

ATGTATAGAGCTCTTGGTAGAACTCGGCTCATATACCGTTCCCTCATATCAAACTACGTCAAAACTGGTCTCATAGACAAAGCCCTCCAAGTGTTCGACGAAATGTCCCAATCAGATTGCCGAGTTTTCAGCATCGACTACAACCGTATCATTGGCATTTTGGTATGCCATTCACGTTTCGAATTAGTCGAACTGTACTACGATGCCATGGTTCCAAAAGGTTATTCTTTAAACTCATTCACATACTCAAGGTTCATATG...

Protein

Download Protein FASTA

520 aa · TkA05G312990|TK1151|PROTEIN

MYRALGRTRLIYRSLISNYVKTGLIDKALQVFDEMSQSDCRVFSIDYNRIIGILVCHSRFELVELYYDAMVPKGYSLNSFTYSRFICGLCKVKDFRLIDKLLQDMNRIGAVPDMWAYNMYLNLLCSESLIEMALRVLTNIVEKGKQPDIVTYTTVINGLIRAGHIHTAIEMWHEMIRKGLIPDSYACRSLTLGLCNVGKVDLAYELTVPFMKLNFTTPIYNILIHNFCKSGRLDKAKYLLNFMKRNGCPPDLITYNILLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G312990
TK1151 IDTkA05G312990
OH-1004 IDLXL04_030286
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)35.600
Protein coverage (%)TK1151 19.423 / OH-1004 8.556
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G312990
LocationChr05:77240139-77241849 (+)
DescriptionSimilar to At1g77360: Pentatricopeptide repeat-containing protein At1g77360, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g13040 Pentatricopeptide repeat-containing protein At1g13040, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030286 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G11050
ath:AT1G52640
ath:AT1G71060
ath:AT1G77360
ath:AT2G48010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.837
Rank 1 · TkA05G312990 · TK1151
Nucleus0.057
Rank 2 · TkA05G312990 · TK1151
Plastid0.054
Rank 3 · TkA05G312990 · TK1151
Cytoplasm0.035
Rank 4 · TkA05G312990 · TK1151
Cell membrane0.012
Rank 5 · TkA05G312990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30397MalM_C8-34 aa
PF24760TPR_IF140_C10-35 aa
PF13041PPR_211-40 aa
PF12854PPR_111-36 aa
PF01535PPR11-40 aa
PF29070MSC6_N11-103 aa
PF08579RPM211-22 aa
PF13812PPR_312-54 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G312990PF30397MalM_C8340.002218.7
TkA05G312990PF24760TPR_IF140_C10350.004718.0
TkA05G312990PF13041PPR_211402.9e-115377.0
TkA05G312990PF12854PPR_111367.6e-90295.0
TkA05G312990PF01535PPR11401.1e-73239.1
TkA05G312990PF29070MSC6_N111037.1e-1968.9
TkA05G312990PF08579RPM211220.01316.6
TkA05G312990PF13812PPR_312544e-49165.3
TkA05G312990PF23276TPR_2412511.5e-28100.1
TkA05G312990PF28737VPS18_solenoid_2nd12400.1212.9
TkA05G312990PF11848DUF336815510.2612.1
TkA05G312990PF14689SPOB_a15370.2911.5
TkA05G312990PF17177PPR_long211747.9e-2175.1
TkA05G312990PF10037MRP-S2721378.2e-0729.0
TkA05G312990PF13041PPR_247912.9e-115377.0
TkA05G312990PF01535PPR47711.1e-73239.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SAD9Arabidopsis thalianasp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial62.300%Swiss-ProtLow

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