Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1705 bp · TkA05G108250|TK1151|cDNA
TTGTAAATGAGTTGATTAGATAGATAACAAGGAATCTAGATAACAAGGAATCTGAATCTTCGTCATCATCCCTTCCAATTACCAACTACTACTAGTTCAAGTAGTTTTCAAGGTCGCCTGACATTGTTTCGCTATTCCTTCTGCAAAACCATCGATCAACAACCGATCTATCAAAAACTCAAATGGGATTCAATCGATACAATAATTTAGTCCGAAGTATTACTAATACCTATCGATCAAGAACAACTTACTCTTGTTCT...
1323 bp · TkA05G108250|TK1151|CDS
ATGGGATTCAATCGATACAATAATTTAGTCCGAAGTATTACTAATACCTATCGATCAAGAACAACTTACTCTTGTTCTTCGTTTTACTGTAATCAGCGGAGAACATCAGTGACGTCTTCTTCCCCTTGTTCCGATGATCAGAAAACAAAATCGTTTTCAACAATATCGAGTTCATCGTATCACCTGAACGGTGGACCCTCGTATATGCGAGGAGCTGTTTTCTGGGAACCAAATAAGCCTATGACTTTTGAAGACTTTGA...
Protein
Download Protein FASTA440 aa · TkA05G108250|TK1151|PROTEIN
MGFNRYNNLVRSITNTYRSRTTYSCSSFYCNQRRTSVTSSSPCSDDQKTKSFSTISSSSYHLNGGPSYMRGAVFWEPNKPMTFEDFEMPRPKVNEVLIKTKACGVCHSDLHVIKGELTFPSPCVVGHEITGEVVEHGPLTDTKTIERLPLGARVVGAFIMPCGNCFFCTKGQDDLCEAFFAYNRAKGTLYDGETRLFLRGSGKPVYMYSMGGLAEYSVVPANALTILPHSLPYSESAVIGCAVFTAYGAMAHAAQVRPGD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G108250 |
|---|---|
| TK1151 ID | TkA05G108250 |
| OH-1004 ID | LXL04_019951 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G108250 |
|---|---|
| Location | Chr05:28986363-28989386 (+) |
| Description | Similar to Msed_1424: Succinate-semialdehyde dehydrogenase (acetylating) (Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0001523 retinoid metabolic process Biological Process GO:0042572 retinol metabolic process Biological Process GO:0042573 retinoic acid metabolic process Biological Process GO:0046294 formaldehyde catabolic process Biological Process GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function GO:0004745 all-trans-retinol dehydrogenase (NAD+) activity Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0016491 oxidoreductase activity Molecular Function GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity Molecular Function |
| KEGG gene cross-reference | hsa:125 mbo:BQ2027_MB0784C mse:Msed_1424 mtc:MT0786 mtu:Rv0761c mtv:RVBD_0761c These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08240ADH_N94-228 aaPF16912Glu_dehyd_C250-427 aaPF08240ADH_N253-267 aaPF01262AlaDh_PNT_C253-312 aaPF028262-Hacid_dh_C259-306 aaPF02254TrkA_N262-314 aaPF17836PglD_N262-343 aaPF03435Sacchrp_dh_NADP262-347 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G108250 | PF08240 | ADH_N | 94 | 228 | 7.1e-23 | 81.6 |
| TkA05G108250 | PF16912 | Glu_dehyd_C | 250 | 427 | 1.4e-08 | 35.2 |
| TkA05G108250 | PF08240 | ADH_N | 253 | 267 | 7.1e-23 | 81.6 |
| TkA05G108250 | PF01262 | AlaDh_PNT_C | 253 | 312 | 0.001 | 19.3 |
| TkA05G108250 | PF02826 | 2-Hacid_dh_C | 259 | 306 | 0.0018 | 18.4 |
| TkA05G108250 | PF02254 | TrkA_N | 262 | 314 | 0.0012 | 19.9 |
| TkA05G108250 | PF17836 | PglD_N | 262 | 343 | 0.014 | 16.7 |
| TkA05G108250 | PF03435 | Sacchrp_dh_NADP | 262 | 347 | 0.046 | 14.8 |
| TkA05G108250 | PF00899 | ThiF | 262 | 291 | 0.072 | 13.0 |
| TkA05G108250 | PF02737 | 3HCDH_N | 262 | 308 | 0.37 | 11.4 |
| TkA05G108250 | PF01728 | FtsJ | 264 | 347 | 0.031 | 14.9 |
| TkA05G108250 | PF00107 | ADH_zinc_N | 269 | 400 | 2e-37 | 128.7 |
| TkA05G108250 | PF13649 | Methyltransf_25 | 269 | 313 | 0.014 | 16.7 |
| TkA05G108250 | PF13847 | Methyltransf_31 | 269 | 302 | 0.23 | 11.9 |
| TkA05G108250 | PF13602 | ADH_zinc_N_2 | 302 | 437 | 4.6e-13 | 50.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.