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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G099610
Reference: TK1151 Chr: Chr05 Coordinates: 26847152-26849125 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1974 bp · TkA05G099610|TK1151|cDNA

ATGAGAAAAACCCTAGTTAAATCCCTCTACCCCGTCGCAACCAACAGACCTCACTCTTCATTCATCAATGGCGGAAGAAAGATTCATCACCCACTTAGCAGTTCCTCAAAACCGGAACCAAATCCACTTCCCATCTCCAAGGCCAGATGGGTTTTCACCACAACCGCACCCCCACCGCCGGAATGGGTTCAACCCATCAACGACACCTCCGACCTCATCACACCACATCCGAAGCCTTCTCAATGGGTTGACCAGATCCT...

CDS

Download CDS FASTA

1974 bp · TkA05G099610|TK1151|CDS

ATGAGAAAAACCCTAGTTAAATCCCTCTACCCCGTCGCAACCAACAGACCTCACTCTTCATTCATCAATGGCGGAAGAAAGATTCATCACCCACTTAGCAGTTCCTCAAAACCGGAACCAAATCCACTTCCCATCTCCAAGGCCAGATGGGTTTTCACCACAACCGCACCCCCACCGCCGGAATGGGTTCAACCCATCAACGACACCTCCGACCTCATCACACCACATCCGAAGCCTTCTCAATGGGTTGACCAGATCCT...

Protein

Download Protein FASTA

657 aa · TkA05G099610|TK1151|PROTEIN

MRKTLVKSLYPVATNRPHSSFINGGRKIHHPLSSSSKPEPNPLPISKARWVFTTTAPPPPEWVQPINDTSDLITPHPKPSQWVDQILNLLNDDSSQMEPKLDDFCRRWFIRLSPNFVSYILSSSRVKNQPELSYRFFKWAGKQKGGGYTYSHNIESYAFLIDVLSVSKDLDRVKSVFIELKQKRFLMNIKSANLLIKSFGNLGMVEELLWVWKKMKENGIEPSLFTFNFLINGLVNSMFIESAEQVFEVMETGPTKPDTV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G099610
TK1151 IDTkA05G099610
OH-1004 IDLXL04_019877
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G099610
LocationChr05:26847152-26849125 (-)
DescriptionSimilar to At1g03560: Pentatricopeptide repeat-containing protein At1g03560, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g03560 Pentatricopeptide repeat-containing protein At1g03560, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019877 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G03560
ath:AT3G06920
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.838
Rank 1 · TkA05G099610 · TK1151
Plastid0.094
Rank 2 · TkA05G099610 · TK1151
Nucleus0.060
Rank 3 · TkA05G099610 · TK1151
Cytoplasm0.030
Rank 4 · TkA05G099610 · TK1151
Cell membrane0.012
Rank 5 · TkA05G099610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30136MSC6_C148-178 aa
PF17177PPR_long151-223 aa
PF13041PPR_2153-199 aa
PF13812PPR_3153-201 aa
PF01535PPR156-184 aa
PF10037MRP-S27157-253 aa
PF29070MSC6_N164-248 aa
PF23276TPR_24179-233 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G099610PF30136MSC6_C1481780.1711.9
TkA05G099610PF17177PPR_long1512231.2e-2384.4
TkA05G099610PF13041PPR_21531992.4e-84278.0
TkA05G099610PF13812PPR_31532011.2e-40138.2
TkA05G099610PF01535PPR1561844.4e-80259.2
TkA05G099610PF10037MRP-S271572530.07312.7
TkA05G099610PF29070MSC6_N1642482.1e-30106.8
TkA05G099610PF23276TPR_241792334.4e-31108.3
TkA05G099610PF13041PPR_21882362.4e-84278.0
TkA05G099610PF13812PPR_31882351.2e-40138.2
TkA05G099610PF17049AEP11893110.008915.9
TkA05G099610PF01535PPR1932204.4e-80259.2
TkA05G099610PF12854PPR_11932072.1e-66220.0
TkA05G099610PF06239ECSIT_N2022400.03114.3
TkA05G099610PF17177PPR_long2043021.2e-2384.4
TkA05G099610PF08579RPM22052360.0614.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LR67Arabidopsis thalianasp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560, mitochondrial48.500%Swiss-ProtLow

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