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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_019877
Reference: OH-1004 Chr: Chr04 Coordinates: 42905751-42907724 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1974 bp · LXL04_019877|LXL04_019877|OH1004|cDNA

ATGAGAAAAACCCTACTTAAATCCCTCTACCCCGTCGCAACCAACAGACCTCACTCTTCATTCATCAATGGCGGAAGAAAGATTCATCACCCACTTAGCAGTTCCTCAAAACCGGAACCAAATCCACTTCCCATCTCCAAGGCCAGATGGGTTTTCACCACAACCGCACCCCCACCGCCGGAATGGGTTCAACCCATCAACGACACCTCCGACCTCATCACACCACATCCGAAGCCTTCTCAATGGGTTGACCAGATCCT...

CDS

Download CDS FASTA

1974 bp · LXL04_019877|LXL04_019877|OH1004|CDS

ATGAGAAAAACCCTACTTAAATCCCTCTACCCCGTCGCAACCAACAGACCTCACTCTTCATTCATCAATGGCGGAAGAAAGATTCATCACCCACTTAGCAGTTCCTCAAAACCGGAACCAAATCCACTTCCCATCTCCAAGGCCAGATGGGTTTTCACCACAACCGCACCCCCACCGCCGGAATGGGTTCAACCCATCAACGACACCTCCGACCTCATCACACCACATCCGAAGCCTTCTCAATGGGTTGACCAGATCCT...

Protein

Download Protein FASTA

657 aa · LXL04_019877|LXL04_019877|OH1004|PROTEIN

MRKTLLKSLYPVATNRPHSSFINGGRKIHHPLSSSSKPEPNPLPISKARWVFTTTAPPPPEWVQPINDTSDLITPHPKPSQWVDQILNLLNDDSSQMEPKLDDFCRRWFIRLSPNFVSYILSSSRVKNQPELSYRFFKWAGKQKGGGYTYSHNIESYAFLIDVLSVSKDLDRVKSVFIELKQKRFLMNIKSANLLIKSFGNLGMVEELLWVWKKMKENGIEPSLFTFNFLINGLVNSMFIESAEQVFEVMETGPTKPDTV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_019877
TK1151 IDTkA05G099610
OH-1004 IDLXL04_019877
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_019877
LocationChr04:42905751-42907724 (-)
DescriptionSimilar to At1g03560: Pentatricopeptide repeat-containing protein At1g03560, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g03560 Pentatricopeptide repeat-containing protein At1g03560, mitochondrial. No verified direct reference in this release
At3g06920 Pentatricopeptide repeat-containing protein At3g06920. No verified direct reference in this release
At3g53700 May be involved in female gametophyte development. No verified direct reference in this release
At5g65560 Pentatricopeptide repeat-containing protein At5g65560. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q76C99 Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019877 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G03560
ath:AT3G06920
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.838
Rank 1 · LXL04_019877 · OH-1004
Plastid0.094
Rank 2 · LXL04_019877 · OH-1004
Nucleus0.060
Rank 3 · LXL04_019877 · OH-1004
Cytoplasm0.031
Rank 4 · LXL04_019877 · OH-1004
Cell membrane0.012
Rank 5 · LXL04_019877 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N164-248 aa
PF13041.13PPR_2188-236 aa
PF13812.13PPR_3188-235 aa
PF01535.27PPR193-220 aa
PF17177.11PPR_long209-327 aa
PF12854.14PPR_1218-251 aa
PF13041.13PPR_2240-268 aa
PF23276.3TPR_24243-344 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_019877PF29070.1MSC6_N1642482.3e-31110.0
LXL04_019877PF13041.13PPR_21882368.3e-85279.5
LXL04_019877PF13812.13PPR_31882352.6e-40137.0
LXL04_019877PF01535.27PPR1932201.9e-80260.4
LXL04_019877PF17177.11PPR_long2093271.5e-2590.6
LXL04_019877PF12854.14PPR_12182515.4e-67221.9
LXL04_019877PF13041.13PPR_22402688.3e-85279.5
LXL04_019877PF23276.3TPR_242433441.4e-30106.6
LXL04_019877PF13812.13PPR_32482902.6e-40137.0
LXL04_019877PF12854.14PPR_12562865.4e-67221.9
LXL04_019877PF13041.13PPR_22573048.3e-85279.5
LXL04_019877PF01535.27PPR2602901.9e-80260.4
LXL04_019877PF13041.13PPR_22933268.3e-85279.5
LXL04_019877PF01535.27PPR2953241.9e-80260.4
LXL04_019877PF17177.11PPR_long3074421.5e-2590.6
LXL04_019877PF01535.27PPR3313591.9e-80260.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LR67Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g03560, mitochondrial59.545%Swiss-Protstrong database homology
Q9M907Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g0692026.946%Swiss-Protweak database homology
Q9LFF1Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g53700, chloroplastic25.906%Swiss-Protweak database homology
Q9LSL9Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g6556027.105%Swiss-Protweak database homology
Q76C99Oryza sativa subsp. indicaProtein Rf1, mitochondrial27.801%Swiss-Protweak database homology

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