TkA05G070010 | RubberDandelionOmics

Gene overview

TkA05G070010

Reference: TK1151 Chr: Chr05 Coordinates: 18765484-18771948 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

636 bp · TkA05G070010|TK1151|cDNA

ATGATCTTCATGGGGACAAGATTATACATGGAAGCAACAAACGAGTTGTCAATCAATCAAAGGTCCACGGCATTGGTGTTGCTTAGCACTAGATCTATTGGTAGTTACAAGTCCGTAGATGATATGGTCAAAAATAAAGAAGCTAAAAGTCTATGGGGAAACCAATTTTCACTCTTGCATGTTTATTTGCCGAAGCTTCATCAATATGAGGAGTCTTTAAACCCACTGAGATTTGTTCAAGAAACACAGAATATCATCAG...

CDS

Download CDS FASTA

636 bp · TkA05G070010|TK1151|CDS

ATGATCTTCATGGGGACAAGATTATACATGGAAGCAACAAACGAGTTGTCAATCAATCAAAGGTCCACGGCATTGGTGTTGCTTAGCACTAGATCTATTGGTAGTTACAAGTCCGTAGATGATATGGTCAAAAATAAAGAAGCTAAAAGTCTATGGGGAAACCAATTTTCACTCTTGCATGTTTATTTGCCGAAGCTTCATCAATATGAGGAGTCTTTAAACCCACTGAGATTTGTTCAAGAAACACAGAATATCATCAG...

Protein

Download Protein FASTA

211 aa · TkA05G070010|TK1151|PROTEIN

MIFMGTRLYMEATNELSINQRSTALVLLSTRSIGSYKSVDDMVKNKEAKSLWGNQFSLLHVYLPKLHQYEESLNPLRFVQETQNIIRRKRNSGAVYLTGMMLESMRKYRGPEVAAKYIHTTIKNSSMSVSNMIGPLKKMSLSNQPIKGLYFMAANVPQNLMVTITSYMDQLRVAVGTDKCLIDPMKFKTYIKKAFTMIFDDAIKSKGHDKW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G070010`
TK1151 ID	TkA05G070010
OH-1004 ID	LXL04_019922
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	73.200
Protein coverage (%)	TK1151 97.156 / OH-1004 42.827 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G070010

Location Chr05:18765484-18771948 (+)

Description Similar to WSD1: O-acyltransferase WSD1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g49190`	Bifunctional wax ester synthase/diacylglycerol acyltransferase (By similarity).	No verified direct reference in this release
`At3g49210`	Bifunctional wax ester synthase/diacylglycerol acyltransferase that uses acyl-CoAs with 16, 18 and 20 carbons as substrates, preferably in combination with 16:0ol alcohol.	Surface wax esters contribute to drought tolerance in Arabidopsis.2019 · DOI: 10.1111/tpj.14269
`At3g49200`	Bifunctional wax ester synthase/diacylglycerol acyltransferase (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019922 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0019432 triglyceride biosynthetic process Biological Process

GO:0048441 petal development Biological Process

GO:0048446 petal morphogenesis Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT3G49190

ath:AT3G49200

ath:AT3G49210

ath:AT5G12420

ath:AT5G53390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.704

Rank 1 · TkA05G070010 · TK1151

Nucleus0.100

Rank 2 · TkA05G070010 · TK1151

Golgi apparatus0.098

Rank 3 · TkA05G070010 · TK1151

Cytoplasm0.083

Rank 4 · TkA05G070010 · TK1151

Cell membrane0.080

Rank 5 · TkA05G070010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06974WS_DGAT_C52-198 aa

PF27772Atp2259-126 aa

PF18814PBECR5163-204 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G070010	`PF06974`	WS_DGAT_C	52	198	1.2e-36	126.6
TkA05G070010	`PF27772`	Atp22	59	126	0.021	14.2
TkA05G070010	`PF18814`	PBECR5	163	204	0.094	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M3B3`	Arabidopsis thaliana	sp\|Q9M3B3\|WSD4_ARATH Wax ester synthase/diacylglycerol acyltransferase 4	29.700%	Swiss-Prot	Low
`Q9M3B1`	Arabidopsis thaliana	sp\|Q9M3B1\|WSD6_ARATH Wax ester synthase/diacylglycerol acyltransferase 6	32.200%	Swiss-Prot	Medium
`Q9M3B2`	Arabidopsis thaliana	sp\|Q9M3B2\|WSD5_ARATH Wax ester synthase/diacylglycerol acyltransferase 5	25.400%	Swiss-Prot	Low

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