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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G062550
Reference: TK1151 Chr: Chr05 Coordinates: 16667720-16669283 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1302 bp · TkA05G062550|TK1151|cDNA

ATGAACATGTACGTAAAGTTTAACTTACTGGACGAAGCACAGGCACTGTTCGATCAAATGCAAATGGAAACAGGTGATTTAATCGTCTGGAACTCAATAATCAGTGCATTCGCTCAAAACAACAATGGAGATGACGCTCTGAATCTTTTCAAACAAATGAAGAAATCCGGATTCATGGCAGATCAGGCAACATTAACTAGTGTCTTAAGAGCTTGCACAGGTATGGCTTTGTTAGAACTAGGAAGACAAGTACATGTTCA...

CDS

Download CDS FASTA

1302 bp · TkA05G062550|TK1151|CDS

ATGAACATGTACGTAAAGTTTAACTTACTGGACGAAGCACAGGCACTGTTCGATCAAATGCAAATGGAAACAGGTGATTTAATCGTCTGGAACTCAATAATCAGTGCATTCGCTCAAAACAACAATGGAGATGACGCTCTGAATCTTTTCAAACAAATGAAGAAATCCGGATTCATGGCAGATCAGGCAACATTAACTAGTGTCTTAAGAGCTTGCACAGGTATGGCTTTGTTAGAACTAGGAAGACAAGTACATGTTCA...

Protein

Download Protein FASTA

433 aa · TkA05G062550|TK1151|PROTEIN

MNMYVKFNLLDEAQALFDQMQMETGDLIVWNSIISAFAQNNNGDDALNLFKQMKKSGFMADQATLTSVLRACTGMALLELGRQVHVHVLKYNNQDLILGNALLDMYCKCGSMEDARFEFTKMVEKDVISWSTMINGLAQNGFSHEALNMFQSMEASGTRPNYITIVGVLFACSHAGFLEKGQSFFESMEKNYGIKPGREHYGCMVDLLGRSGRLSEALDLIKTMEPEPDAVTWRTLLGACRMHRDMGLAAYAANRVLDLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G062550
TK1151 IDTkA05G062550
OH-1004 IDLXL04_019551
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.500
Protein coverage (%)TK1151 99.307 / OH-1004 66.357
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G062550
LocationChr05:16667720-16669283 (-)
DescriptionSimilar to PCMP-H44: Pentatricopeptide repeat-containing protein At2g03880, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At3g26782 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial. No verified direct reference in this release
At1g56690 Pentatricopeptide repeat-containing protein At1g56690, mitochondrial. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019551 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G03880
ath:AT3G24000
ath:AT4G13650
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.609
Rank 1 · TkA05G062550 · TK1151
Plastid0.256
Rank 2 · TkA05G062550 · TK1151
Nucleus0.070
Rank 3 · TkA05G062550 · TK1151
Cytoplasm0.039
Rank 4 · TkA05G062550 · TK1151
Peroxisome0.008
Rank 5 · TkA05G062550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR1-21 aa
PF13041PPR_21-21 aa
PF29070MSC6_N1-71 aa
PF13176TPR_72-19 aa
PF13428TPR_143-29 aa
PF12854PPR_17-21 aa
PF14559TPR_1910-56 aa
PF13041PPR_226-72 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G062550PF01535PPR1219.5e-36120.3
TkA05G062550PF13041PPR_21211.5e-33115.4
TkA05G062550PF29070MSC6_N1711.9e-0937.9
TkA05G062550PF13176TPR_72190.03814.8
TkA05G062550PF13428TPR_143290.001919.4
TkA05G062550PF12854PPR_17217.1e-2793.6
TkA05G062550PF14559TPR_1910567.9e-0833.2
TkA05G062550PF13041PPR_226721.5e-33115.4
TkA05G062550PF12854PPR_126547.1e-2793.6
TkA05G062550PF13812PPR_326586.2e-1142.9
TkA05G062550PF01535PPR29589.5e-36120.3
TkA05G062550PF23276TPR_2430716.8e-0936.5
TkA05G062550PF13428TPR_1430530.001919.4
TkA05G062550PF13432TPR_1634510.212.8
TkA05G062550PF13176TPR_736520.03814.8
TkA05G062550PF20431E_motif37571.5e-2383.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial66.200%Swiss-ProtHigh
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365043.000%Swiss-ProtMedium
Q9LW32Arabidopsis thalianasp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial44.200%Swiss-ProtMedium
Q9FXB9Arabidopsis thalianasp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial44.600%Swiss-ProtMedium
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914246.200%Swiss-ProtMedium

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