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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_019551
Reference: OH-1004 Chr: Chr04 Coordinates: 33689655-33691592 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1938 bp · LXL04_019551|LXL04_019551|OH1004|cDNA

ATGAAATCAATCTTGAACTACAAGCCCAAATCCATCTCTGCTAATGTTGCTGTTAAACTACAATCGTTGCTACAATTTCATCATCAATGTCATCCAACTCCCCACCAATCTCCCTTACCCAATACTCTACTTCATGAATTCACTGCCTCCTGCTACCGCAGAGACCTCCCCGCCGCCATGAAAGCTTTGACTTCAATGCAACAGCACCAAATTTGGGCCGATTCCGTCACATATTCCGAACTCATTAAGTGTTGTCTCGC...

CDS

Download CDS FASTA

1938 bp · LXL04_019551|LXL04_019551|OH1004|CDS

ATGAAATCAATCTTGAACTACAAGCCCAAATCCATCTCTGCTAATGTTGCTGTTAAACTACAATCGTTGCTACAATTTCATCATCAATGTCATCCAACTCCCCACCAATCTCCCTTACCCAATACTCTACTTCATGAATTCACTGCCTCCTGCTACCGCAGAGACCTCCCCGCCGCCATGAAAGCTTTGACTTCAATGCAACAGCACCAAATTTGGGCCGATTCCGTCACATATTCCGAACTCATTAAGTGTTGTCTCGC...

Protein

Download Protein FASTA

645 aa · LXL04_019551|LXL04_019551|OH1004|PROTEIN

MKSILNYKPKSISANVAVKLQSLLQFHHQCHPTPHQSPLPNTLLHEFTASCYRRDLPAAMKALTSMQQHQIWADSVTYSELIKCCLARGAILEAKIVHKHIFSNGYNPKTFLINTLMNMYVKFNLLDDAQALFDQMPERNVVSWTTMISAFSTAKLDDKAMEFLILMLRNGIRPNMYTFSKVLRSCNGLTILKQIHCSIIKPGLDSDVFVRSALIDNYSKWGELQNALTTFKEMETGDLIVWNSIISAFAQNNNGDEALN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_019551
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_019551
LocationChr04:33689655-33691592 (-)
DescriptionSimilar to PCMP-H44: Pentatricopeptide repeat-containing protein At2g03880, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At3g24000 Pentatricopeptide repeat-containing protein At3g24000, mitochondrial. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At3g13770 Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial. No verified direct reference in this release
At3g26782 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019551 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G03880
ath:AT3G24000
ath:AT4G13650
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.660
Rank 1 · LXL04_019551 · OH-1004
Plastid0.225
Rank 2 · LXL04_019551 · OH-1004
Nucleus0.050
Rank 3 · LXL04_019551 · OH-1004
Cytoplasm0.034
Rank 4 · LXL04_019551 · OH-1004
Cell membrane0.007
Rank 5 · LXL04_019551 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2108-141 aa
PF01535.27PPR114-141 aa
PF13041.13PPR_2139-186 aa
PF13812.13PPR_3139-186 aa
PF01535.27PPR142-172 aa
PF13041.13PPR_2238-284 aa
PF12854.14PPR_1238-266 aa
PF01535.27PPR241-270 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_019551PF13041.13PPR_21081416.4e-55183.8
LXL04_019551PF01535.27PPR1141414.8e-51168.2
LXL04_019551PF13041.13PPR_21391866.4e-55183.8
LXL04_019551PF13812.13PPR_31391863.8e-2382.0
LXL04_019551PF01535.27PPR1421724.8e-51168.2
LXL04_019551PF13041.13PPR_22382846.4e-55183.8
LXL04_019551PF12854.14PPR_12382661.7e-34117.9
LXL04_019551PF01535.27PPR2412704.8e-51168.2
LXL04_019551PF12854.14PPR_13343661.7e-34117.9
LXL04_019551PF13041.13PPR_23373836.4e-55183.8
LXL04_019551PF01535.27PPR3403694.8e-51168.2
LXL04_019551PF20431.5E_motif4555171.2e-2383.8
LXL04_019551PF14432.13DYW_deaminase5536456.8e-36122.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SI53Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g03880, mitochondrial66.003%Swiss-Protstrong database homology
Q9LIQ7Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g24000, mitochondrial41.852%Swiss-Protmoderate database homology
Q9SVP7Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g1365039.597%Swiss-Protmoderate database homology
Q9LIC3Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At3g13770, mitochondrial41.075%Swiss-Protmoderate database homology
Q9LW32Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g26782, mitochondrial40.099%Swiss-Protmoderate database homology

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