TkA05G058020 | RubberDandelionOmics

Gene overview

TkA05G058020

Reference: TK1151 Chr: Chr05 Coordinates: 15450294-15451703 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1338 bp · TkA05G058020|TK1151|cDNA

GGCAACAAACACTTTATTGATTAATATATTTAAAAATGTGGCAGAGCCAATATACTGGCCAATGTTTATTATTGCGACACTATCTGCAATTGTCGCGAGTCAAGCTTCCATATCTGCTACTTTTACAATAATTAATCAAGCGTGTGCACACGGCTGTTTCCCACGTGTCAAAGTTGTTCATACATCAAAAAAGTTTCTTGGGCAGATTTACGTTCCAGATATCAACTGGACACTCATGATTCTTTGCATTCTTGTAACAA...

CDS

Download CDS FASTA

1275 bp · TkA05G058020|TK1151|CDS

ATGTTTATTATTGCGACACTATCTGCAATTGTCGCGAGTCAAGCTTCCATATCTGCTACTTTTACAATAATTAATCAAGCGTGTGCACACGGCTGTTTCCCACGTGTCAAAGTTGTTCATACATCAAAAAAGTTTCTTGGGCAGATTTACGTTCCAGATATCAACTGGACACTCATGATTCTTTGCATTCTTGTAACAACCGGATTCAAAAATCAAACCCAAATTGGTAATGCTTACGGCACCGCAGTGGTAGTGGTGAT...

Protein

Download Protein FASTA

424 aa · TkA05G058020|TK1151|PROTEIN

MFIIATLSAIVASQASISATFTIINQACAHGCFPRVKVVHTSKKFLGQIYVPDINWTLMILCILVTTGFKNQTQIGNAYGTAVVVVMLVTTFLMIPIMLLVWQCNWFVVFIMTFLSLVVECTYFSAVLIKIDQGAWVPLAIAAVFLLIMYVWHYGTVKRYEFEMQNKISMGWILNLGPSLGLVRVPGIGLVYTELASGVPRIFSHFITNLPAIHTVVVFVCVKSLPVYSVPEDERFLVKRVGPKNYHIFRCVARYGYKDQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G058020`
TK1151 ID	TkA05G058020
OH-1004 ID	LXL04_014253
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	71.600
Protein coverage (%)	TK1151 96.226 / OH-1004 51.905 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G058020

Location Chr05:15450294-15451703 (+)

Description Similar to POT11: Potassium transporter 11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35060`	Probable potassium transporter.	No verified direct reference in this release
`At1g31120`	Putative potassium transporter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0613900`	High-affinity potassium transporter.	No verified direct reference in this release
`Os09g0563200`	High-affinity potassium transporter.	No verified direct reference in this release
`Os08g0206400`	High-affinity potassium transporter.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014253 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006813 potassium ion transport Biological Process

GO:0009555 pollen development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0015079 potassium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G31120

ath:AT2G35060

dosa:Os04g0613900

dosa:Os09g0563200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.401

Rank 1 · TkA05G058020 · TK1151

Lysosome / Vacuole0.346

Rank 2 · TkA05G058020 · TK1151

Cytoplasm0.156

Rank 3 · TkA05G058020 · TK1151

Endoplasmic reticulum0.138

Rank 4 · TkA05G058020 · TK1151

Golgi apparatus0.114

Rank 5 · TkA05G058020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02705K_trans1-156 aa

PF22776K_trans_C186-408 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G058020	`PF02705`	K_trans	1	156	1e-48	166.8
TkA05G058020	`PF22776`	K_trans_C	186	408	4.8e-25	88.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O64769`	Arabidopsis thaliana	sp\|O64769\|POT11_ARATH Potassium transporter 11	67.500%	Swiss-Prot	High
`Q9SA05`	Arabidopsis thaliana	sp\|Q9SA05\|POT10_ARATH Potassium transporter 10	65.900%	Swiss-Prot	High
`Q7XLC6`	Oryza sativa subsp. japonica	sp\|Q7XLC6\|HAK11_ORYSJ Probable potassium transporter 11	67.500%	Swiss-Prot	High
`Q653B6`	Oryza sativa subsp. japonica	sp\|Q653B6\|HAK18_ORYSJ Potassium transporter 18	66.500%	Swiss-Prot	High
`Q8VXB1`	Oryza sativa subsp. japonica	sp\|Q8VXB1\|HAK12_ORYSJ Putative potassium transporter 12	65.900%	Swiss-Prot	High

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