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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G057480
Reference: TK1151 Chr: Chr05 Coordinates: 15292646-15296088 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2140 bp · TkA05G057480|TK1151|cDNA

ACAAACCAGATATGAATTTGTTTTCTTCTCCCTATTTTTCTGCAGATATTTTCTATTCCTCTCTCGCACCGTTTCATCGTCAACAGAGGGTCTATCTTCATCTACTTGACAGAATTCTACATGTTGACTATCAAATTTGCTGCAAATTATTTCCCCATCTACCCAACAAGTTGCAAGTGCAACAATGGATGGACAGCCAGAAATTCTGATGCTCAGCCTATGGAGAAACACAAGCGTGATAGTCTTTACACAGACAAGCA...

CDS

Download CDS FASTA

903 bp · TkA05G057480|TK1151|CDS

ATGTTGACTATCAAATTTGCTGCAAATTATTTCCCCATCTACCCAACAAGTTGCAAGTGCAACAATGGATGGACAGCCAGAAATTCTGATGCTCAGCCTATGGAGAAACACAAGCGTGATAGTCTTTACACAGACAAGCAAGGGAAATTAAGAAAATTTAATCATAAAAAAGTCTCAAGAAAAAGGGGTGGTTCTTTAAGAGGACAAGGATGGAAATATGGATCAGGATTTGTGGATGGAATATTTCCAGTTTTGAGCCC...

Protein

Download Protein FASTA

300 aa · TkA05G057480|TK1151|PROTEIN

MLTIKFAANYFPIYPTSCKCNNGWTARNSDAQPMEKHKRDSLYTDKQGKLRKFNHKKVSRKRGGSLRGQGWKYGSGFVDGIFPVLSPDAQQILNFMKRETDVNRVWDALSSLPPTHTTWDDIISVAVQLRLNKKWDPIILMCEWMLYRSSFQADIICYNLLIDAFGQKSSFEKAESTYFNLLEARCIPTEDTYALLLRSYCTAGLLEKAEAVFMEMKKYGLSPSAVVYNAYIDGLMKGRNSQKAVEIFQRMKRNYCQPST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G057480
TK1151 IDTkA05G057480
OH-1004 IDLXL04_019513
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 67.333 / OH-1004 32.013
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G057480
LocationChr05:15292646-15296088 (-)
DescriptionSimilar to At2g35130: Pentatricopeptide repeat-containing protein At2g35130
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g35130 Pentatricopeptide repeat-containing protein At2g35130. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019513 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G35130
ath:AT5G02860
ath:AT5G39980
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.862
Rank 1 · TkA05G057480 · TK1151
Mitochondrion0.094
Rank 2 · TkA05G057480 · TK1151
Nucleus0.049
Rank 3 · TkA05G057480 · TK1151
Cytoplasm0.018
Rank 4 · TkA05G057480 · TK1151
Cell membrane0.009
Rank 5 · TkA05G057480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18535Gal11_ABD185-134 aa
PF23276TPR_2486-117 aa
PF01535PPR88-98 aa
PF12854PPR_188-97 aa
PF13041PPR_289-98 aa
PF13812PPR_3148-200 aa
PF23276TPR_24150-250 aa
PF12854PPR_1152-175 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G057480PF18535Gal11_ABD1851340.0004521.0
TkA05G057480PF23276TPR_24861171.5e-0628.9
TkA05G057480PF01535PPR88988.1e-2689.1
TkA05G057480PF12854PPR_188979.4e-2277.2
TkA05G057480PF13041PPR_289981.4e-30105.8
TkA05G057480PF13812PPR_31482007.1e-2174.8
TkA05G057480PF23276TPR_241502501.5e-0628.9
TkA05G057480PF12854PPR_11521759.4e-2277.2
TkA05G057480PF29070MSC6_N1522026.9e-0832.7
TkA05G057480PF06239ECSIT_N1521680.002717.7
TkA05G057480PF13041PPR_21542011.4e-30105.8
TkA05G057480PF01535PPR1571848.1e-2689.1
TkA05G057480PF24760TPR_IF140_C1571770.01416.5
TkA05G057480PF13762MNE11582020.5510.9
TkA05G057480PF29070MSC6_N1592496.9e-0832.7
TkA05G057480PF17177PPR_long1682245.9e-0626.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O82178Arabidopsis thalianasp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g3513061.300%Swiss-ProtMedium

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