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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_019513
Reference: OH-1004 Chr: Chr04 Coordinates: 32791904-32794710 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1896 bp · LXL04_019513|LXL04_019513|OH1004|cDNA

ATGCCGATGAAGTTGCTGCGTTTGACAATCGATAAAGCAGCAATTAGCATTTTCAGTGTGGGGAATTTACATGACAGGTTGACTATCAAATTTGCTGCAAATTATTTCCCCATCTACCCAACAAGTTGCAAGTGCAACAATGGATGGACAGCCAGAAATTCTGATGCTCAGCCTATGGAGAAACACAAGCGTGATAGTCTTTACACAGACAAGCAAGGGAAATTAAGAAAATTTAATCATAAAAAAGTCTCAAGAAAAAG...

CDS

Download CDS FASTA

1896 bp · LXL04_019513|LXL04_019513|OH1004|CDS

ATGCCGATGAAGTTGCTGCGTTTGACAATCGATAAAGCAGCAATTAGCATTTTCAGTGTGGGGAATTTACATGACAGGTTGACTATCAAATTTGCTGCAAATTATTTCCCCATCTACCCAACAAGTTGCAAGTGCAACAATGGATGGACAGCCAGAAATTCTGATGCTCAGCCTATGGAGAAACACAAGCGTGATAGTCTTTACACAGACAAGCAAGGGAAATTAAGAAAATTTAATCATAAAAAAGTCTCAAGAAAAAG...

Protein

Download Protein FASTA

631 aa · LXL04_019513|LXL04_019513|OH1004|PROTEIN

MPMKLLRLTIDKAAISIFSVGNLHDRLTIKFAANYFPIYPTSCKCNNGWTARNSDAQPMEKHKRDSLYTDKQGKLRKFNHKKVSRKRGGSLRGQGWKYGSGFVDGIFPVLSPDAQQILNFMKRETDVNRVWDALSSLPPTHTTWDDIISVAVQLRLNKKWDPIILMCEWMLYRSSFQADIICYNLLIDAFGQKSSFEKAESTYFNLLEARCIPTEDTYALLLRSYCTAGLLEKAEAVFMEMKKYGLSPSAVVYNAYIDGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_019513
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_019513
LocationChr04:32791904-32794710 (-)
DescriptionSimilar to At2g35130: Pentatricopeptide repeat-containing protein At2g35130
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g35130 Pentatricopeptide repeat-containing protein At2g35130. No verified direct reference in this release
At5g02860 Pentatricopeptide repeat-containing protein At5g02860. No verified direct reference in this release
At5g39980 Pentatricopeptide repeat-containing protein At5g39980, chloroplastic. No verified direct reference in this release
At2g18940 Pentatricopeptide repeat-containing protein At2g18940, chloroplastic. No verified direct reference in this release
At5g16640 Pentatricopeptide repeat-containing protein At5g16640, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019513 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G35130
ath:AT5G02860
ath:AT5G39980
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.700
Rank 1 · LXL04_019513 · OH-1004
Mitochondrion0.187
Rank 2 · LXL04_019513 · OH-1004
Nucleus0.064
Rank 3 · LXL04_019513 · OH-1004
Cytoplasm0.023
Rank 4 · LXL04_019513 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_019513 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2179-226 aa
PF29070.1MSC6_N185-274 aa
PF12854.14PPR_1211-242 aa
PF13041.13PPR_2217-253 aa
PF01535.27PPR217-246 aa
PF13812.13PPR_3217-257 aa
PF13041.13PPR_2248-295 aa
PF01535.27PPR251-280 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_019513PF13041.13PPR_21792262.8e-80265.0
LXL04_019513PF29070.1MSC6_N1852742e-32113.5
LXL04_019513PF12854.14PPR_12112421.7e-50169.2
LXL04_019513PF13041.13PPR_22172532.8e-80265.0
LXL04_019513PF01535.27PPR2172465.9e-66214.9
LXL04_019513PF13812.13PPR_32172571.9e-61204.8
LXL04_019513PF13041.13PPR_22482952.8e-80265.0
LXL04_019513PF01535.27PPR2512805.9e-66214.9
LXL04_019513PF13812.13PPR_32532971.9e-61204.8
LXL04_019513PF29070.1MSC6_N2543502e-32113.5
LXL04_019513PF17177.11PPR_long2643721.7e-29103.4
LXL04_019513PF13041.13PPR_23023372.8e-80265.0
LXL04_019513PF29070.1MSC6_N3023712e-32113.5
LXL04_019513PF13812.13PPR_33053351.9e-61204.8
LXL04_019513PF13812.13PPR_33113701.9e-61204.8
LXL04_019513PF12854.14PPR_13213501.7e-50169.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O82178Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g3513062.692%Swiss-Protstrong database homology
Q9LYZ9Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g0286024.834%Swiss-Protweak database homology
Q9FLD8Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g39980, chloroplastic22.535%Swiss-Protweak database homology
O64624Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g18940, chloroplastic25.957%Swiss-Protweak database homology
Q9FMD3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g16640, mitochondrial25.208%Swiss-Protweak database homology

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