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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G037870
Reference: TK1151 Chr: Chr05 Coordinates: 10246006-10246485 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

480 bp · TkA05G037870|TK1151|cDNA

ATGTCCTCCTCGAGTCAGACCAACACAACTGACTCTTCATCACCTGGAGAAACTGGCTTCGATACCAACACCATTGTAGTTCTAGCAGCCTTATTATGTGCACTTGTAGCTTCACTTGCACTCAACTCAGTCATACAATATGCGTTACGACATAGGCGTGAATCCTTAGAAGCAGCAGCTGCCATGGCCTCACGATCTCAGAAACATACCATAAAGAAGATTCATGTGGAAGTATTTGGGTCAGGAGCAGAGATTCAGGC...

CDS

Download CDS FASTA

480 bp · TkA05G037870|TK1151|CDS

ATGTCCTCCTCGAGTCAGACCAACACAACTGACTCTTCATCACCTGGAGAAACTGGCTTCGATACCAACACCATTGTAGTTCTAGCAGCCTTATTATGTGCACTTGTAGCTTCACTTGCACTCAACTCAGTCATACAATATGCGTTACGACATAGGCGTGAATCCTTAGAAGCAGCAGCTGCCATGGCCTCACGATCTCAGAAACATACCATAAAGAAGATTCATGTGGAAGTATTTGGGTCAGGAGCAGAGATTCAGGC...

Protein

Download Protein FASTA

159 aa · TkA05G037870|TK1151|PROTEIN

MSSSSQTNTTDSSSPGETGFDTNTIVVLAALLCALVASLALNSVIQYALRHRRESLEAAAAMASRSQKHTIKKIHVEVFGSGAEIQASECSICLGDFVDGEKVRVLPQCNHEFHVKCVDKWLVDHMSCPNCRRLVALLPEGERAAGNQSEYDSVLNFMV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G037870
TK1151 IDTkA05G037870
OH-1004 IDLXL04_019282
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G037870
LocationChr05:10246006-10246485 (+)
DescriptionSimilar to ATL72: RING-H2 finger protein ATL72
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g01880 RING-H2 finger protein ATL74. No verified direct reference in this release
At3g10910 RING-H2 finger protein ATL72. No verified direct reference in this release
At1g49230 RING-H2 finger protein ATL78. No verified direct reference in this release
At5g05280 RING-H2 finger protein ATL73. No verified direct reference in this release
At2g17450 E3 ubiquitin-protein ligase that possess E3 ubiquitin ligase activity in vitro and mediates protein monoubiquitination.
Ligand-induced monoubiquitination of BIK1 regulates plant immunity.2020 · DOI: 10.1038/s41586-020-2210-3

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019282 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006513 protein monoubiquitination Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009555 pollen development Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0048443 stamen development Biological Process
GO:0048481 plant ovule development Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0080141 regulation of jasmonic acid biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G49230
ath:AT2G17450
ath:AT3G10910
ath:AT5G01880
ath:AT5G05280
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.411
Rank 1 · TkA05G037870 · TK1151
Lysosome / Vacuole0.271
Rank 2 · TkA05G037870 · TK1151
Endoplasmic reticulum0.200
Rank 3 · TkA05G037870 · TK1151
Cytoplasm0.168
Rank 4 · TkA05G037870 · TK1151
Golgi apparatus0.121
Rank 5 · TkA05G037870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13832zf-HC5HC2H_269-120 aa
PF29452FAR1_N87-122 aa
PF13920zf-C3HC4_388-134 aa
PF13639zf-RING_289-132 aa
PF17123zf-RING_1189-118 aa
PF13923zf-C3HC4_289-131 aa
PF14634zf-RING_589-133 aa
PF11793FANCL_C89-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G037870PF13832zf-HC5HC2H_2691200.07214.0
TkA05G037870PF29452FAR1_N871220.06214.0
TkA05G037870PF13920zf-C3HC4_3881340.003417.9
TkA05G037870PF13639zf-RING_2891324e-1453.3
TkA05G037870PF17123zf-RING_11891181.2e-1248.0
TkA05G037870PF13923zf-C3HC4_2891311.4e-0731.9
TkA05G037870PF14634zf-RING_5891333.2e-0524.5
TkA05G037870PF11793FANCL_C891270.003718.2
TkA05G037870PF14446Prok-RING_1891200.07813.9
TkA05G037870PF21202SLX1_C891250.3412.0
TkA05G037870PF00097zf-C3HC4901316.8e-0626.6
TkA05G037870PF13445zf-RING_UBOX901290.0009919.8
TkA05G037870PF14570zf-RING_4901330.008216.6
TkA05G037870PF22191IBR_1901010.07413.7
TkA05G037870PF24921RING_XB3-XBAT31901226.77.6
TkA05G037870PF12678zf-rbx11031321.1e-0629.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LZV8Arabidopsis thalianasp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL7456.800%Swiss-ProtLow
Q9SG96Arabidopsis thalianasp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL7249.500%Swiss-ProtMedium
Q6NQG7Arabidopsis thalianasp|Q6NQG7|ATL78_ARATH RING-H2 finger protein ATL7839.700%Swiss-ProtMedium
Q9FLC6Arabidopsis thalianasp|Q9FLC6|ATL73_ARATH RING-H2 finger protein ATL7350.000%Swiss-ProtMedium
O22755Arabidopsis thalianasp|O22755|ATL44_ARATH Probable E3 ubiquitin-protein ligase ATL4439.000%Swiss-ProtMedium

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