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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G037320
Reference: TK1151 Chr: Chr05 Coordinates: 10142420-10142845 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

426 bp · TkA05G037320|TK1151|cDNA

ATGTGGATCGTCTTGCTATGTGGATTAATAGCCTCTTTTGGAGTGTTTCAAGTGATACGTTATGTTATGCAACGAAGACGTACATCCAACCCGACAACACAAACATCAGAACACGAACCACAACCCGAACCTTGTGTTGGTCTTAAGAAATCCGTTGTTGCTCAGATTTCAACACGGGTTCTTGGATCGATACTCAAGATTTCAGTTACTGAATGCTCCATATGCCTTGAAGATTTTGTGGATGGACAAAATGTGCGCGT...

CDS

Download CDS FASTA

426 bp · TkA05G037320|TK1151|CDS

ATGTGGATCGTCTTGCTATGTGGATTAATAGCCTCTTTTGGAGTGTTTCAAGTGATACGTTATGTTATGCAACGAAGACGTACATCCAACCCGACAACACAAACATCAGAACACGAACCACAACCCGAACCTTGTGTTGGTCTTAAGAAATCCGTTGTTGCTCAGATTTCAACACGGGTTCTTGGATCGATACTCAAGATTTCAGTTACTGAATGCTCCATATGCCTTGAAGATTTTGTGGATGGACAAAATGTGCGCGT...

Protein

Download Protein FASTA

141 aa · TkA05G037320|TK1151|PROTEIN

MWIVLLCGLIASFGVFQVIRYVMQRRRTSNPTTQTSEHEPQPEPCVGLKKSVVAQISTRVLGSILKISVTECSICLEDFVDGQNVRVLPHCCHEFHIECIDRWFESHSSCPNCRNSLLENQVDSHVVVPESVVNTSNEDMV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G037320
TK1151 IDTkA05G037320
OH-1004 IDLXL04_019280
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 80.114
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G037320
LocationChr05:10142420-10142845 (+)
DescriptionSimilar to ATL73: RING-H2 finger protein ATL73
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g05280 RING-H2 finger protein ATL73. No verified direct reference in this release
At5g01880 RING-H2 finger protein ATL74. No verified direct reference in this release
At2g17450 E3 ubiquitin-protein ligase that possess E3 ubiquitin ligase activity in vitro and mediates protein monoubiquitination.
Ligand-induced monoubiquitination of BIK1 regulates plant immunity.2020 · DOI: 10.1038/s41586-020-2210-3
At4g35480 E3 ubiquitin-protein ligase that possess E3 ubiquitin ligase activity in vitro and mediates protein monoubiquitination.
Ligand-induced monoubiquitination of BIK1 regulates plant immunity.2020 · DOI: 10.1038/s41586-020-2210-3
At1g53820 RING-H2 finger protein ATL60. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019280 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006513 protein monoubiquitination Biological Process
GO:0006952 defense response Biological Process
GO:0009555 pollen development Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0009909 regulation of flower development Biological Process
GO:0010966 regulation of phosphate transport Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0048443 stamen development Biological Process
GO:0048481 plant ovule development Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0070417 cellular response to cold Biological Process
GO:0080141 regulation of jasmonic acid biosynthetic process Biological Process
KEGG gene cross-reference
ath:AT1G20823
ath:AT2G17450
ath:AT3G10910
ath:AT5G01880
ath:AT5G05280
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.322
Rank 1 · TkA05G037320 · TK1151
Endoplasmic reticulum0.270
Rank 2 · TkA05G037320 · TK1151
Lysosome / Vacuole0.209
Rank 3 · TkA05G037320 · TK1151
Golgi apparatus0.203
Rank 4 · TkA05G037320 · TK1151
Nucleus0.181
Rank 5 · TkA05G037320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28919TMIGD3_C1-29 aa
PF29721TMEM129_C27-117 aa
PF05883Baculo_RING63-113 aa
PF14446Prok-RING_170-102 aa
PF13639zf-RING_271-114 aa
PF17123zf-RING_1171-100 aa
PF13923zf-C3HC4_271-113 aa
PF17120zf-RING_1671-112 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G037320PF28919TMIGD3_C1290.006516.6
TkA05G037320PF29721TMEM129_C271170.1513.1
TkA05G037320PF05883Baculo_RING631130.02115.5
TkA05G037320PF14446Prok-RING_1701020.04414.6
TkA05G037320PF13639zf-RING_2711142.3e-1454.0
TkA05G037320PF17123zf-RING_11711001.5e-1041.3
TkA05G037320PF13923zf-C3HC4_2711135.9e-0729.9
TkA05G037320PF17120zf-RING_16711120.1412.5
TkA05G037320PF11793FANCL_C711091.210.2
TkA05G037320PF00097zf-C3HC4721133.8e-0524.2
TkA05G037320PF13445zf-RING_UBOX721110.001119.6
TkA05G037320PF14570zf-RING_4721150.01316.0
TkA05G037320PF23555zf-RING_Vps41721052.18.7
TkA05G037320PF12678zf-rbx1741147e-0626.9
TkA05G037320PF12861zf-ANAPC11861170.0007320.2
TkA05G037320PF08746zf-RING-like891130.212.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FLC6Arabidopsis thalianasp|Q9FLC6|ATL73_ARATH RING-H2 finger protein ATL7353.200%Swiss-ProtMedium
Q9LZV8Arabidopsis thalianasp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL7456.800%Swiss-ProtMedium
O22755Arabidopsis thalianasp|O22755|ATL44_ARATH Probable E3 ubiquitin-protein ligase ATL4439.400%Swiss-ProtMedium
Q9ZT49Arabidopsis thalianasp|Q9ZT49|ATL45_ARATH Probable E3 ubiquitin-protein ligase ATL4536.300%Swiss-ProtMedium
P0C035Arabidopsis thalianasp|P0C035|ATL60_ARATH RING-H2 finger protein ATL6061.700%Swiss-ProtLow

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