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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G032350
Reference: TK1151 Chr: Chr05 Coordinates: 8740025-8740710 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

609 bp · TkA05G032350|TK1151|cDNA

CAAAGATTGGAAATATAGATAAATCTAGAGCCTTGTTTGGGAGAAATGATTTCAAGCATGATCAAACCTCGTGGAACATAATGATTGCAGCATATGGAATGAATGGTCAAGGGAGTGAGTCGTGTAAACTTTTCACCAAAATGCAAGAAAACGGATACACACCGGATGCCATTACATTCACCTCTCTCCTCTCTGCTTGCAGTCATTGTGGGCTTATTGAAGAGGGGTGTAAGTTCTTTGAGCTCATGATTACCAAATAC...

CDS

Download CDS FASTA

519 bp · TkA05G032350|TK1151|CDS

ATGATTGCAGCATATGGAATGAATGGTCAAGGGAGTGAGTCGTGTAAACTTTTCACCAAAATGCAAGAAAACGGATACACACCGGATGCCATTACATTCACCTCTCTCCTCTCTGCTTGCAGTCATTGTGGGCTTATTGAAGAGGGGTGTAAGTTCTTTGAGCTCATGATTACCAAATACAAGATTCGACCAACCATGGAGCATTTGACTTGTATTATAGACATGTTAGGGCGAGCTAATAGTTTGAAAGACGCGTATGA...

Protein

Download Protein FASTA

172 aa · TkA05G032350|TK1151|PROTEIN

MIAAYGMNGQGSESCKLFTKMQENGYTPDAITFTSLLSACSHCGLIEEGCKFFELMITKYKIRPTMEHLTCIIDMLGRANSLKDAYDLMKNGIYEKPVLGALLSACRNNMDMEVGEVVGRKLLEMESGSFEYNSLLSNLYSLNKKWDEVMEIRRVFEDGKVVKKVGLSCLSS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G032350
TK1151 IDTkA05G032350
OH-1004 IDLXL04_019232
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)96.500
Protein coverage (%)TK1151 100.000 / OH-1004 21.995
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G032350
LocationChr05:8740025-8740710 (-)
DescriptionSimilar to PCMP-E36: Pentatricopeptide repeat-containing protein At4g21300
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release
At5g39350 Pentatricopeptide repeat-containing protein At5g39350. No verified direct reference in this release
At4g18750 Plays a major role in single RNA editing events in chloroplasts.
Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.2013 · DOI: 10.1074/jbc.m113.485755
At5g40410 Pentatricopeptide repeat-containing protein At5g40410, mitochondrial. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019232 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G03580
ath:AT4G21300
ath:AT4G33990
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.716
Rank 1 · TkA05G032350 · TK1151
Plastid0.132
Rank 2 · TkA05G032350 · TK1151
Nucleus0.041
Rank 3 · TkA05G032350 · TK1151
Cytoplasm0.035
Rank 4 · TkA05G032350 · TK1151
Cell membrane0.006
Rank 5 · TkA05G032350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR1-25 aa
PF13041PPR_21-41 aa
PF12854PPR_12-22 aa
PF23276TPR_244-87 aa
PF12921ATP135-61 aa
PF29070MSC6_N8-91 aa
PF13812PPR_316-77 aa
PF12854PPR_124-56 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G032350PF01535PPR1251.5e-1350.6
TkA05G032350PF13041PPR_21413.3e-1350.2
TkA05G032350PF12854PPR_12221.5e-0835.0
TkA05G032350PF23276TPR_244870.02815.0
TkA05G032350PF12921ATP135610.01316.1
TkA05G032350PF29070MSC6_N8910.004217.0
TkA05G032350PF13812PPR_316771e-0526.2
TkA05G032350PF12854PPR_124561.5e-0835.0
TkA05G032350PF01535PPR31581.5e-1350.6
TkA05G032350PF13041PPR_234583.3e-1350.2
TkA05G032350PF12921ATP1362900.01316.1
TkA05G032350PF12854PPR_164891.5e-0835.0
TkA05G032350PF01535PPR70901.5e-1350.6
TkA05G032350PF13041PPR_270903.3e-1350.2
TkA05G032350PF01535PPR1011161.5e-1350.6
TkA05G032350PF13812PPR_31011111e-0526.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914242.400%Swiss-ProtMedium
Q9FLZ9Arabidopsis thalianasp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g3935039.500%Swiss-ProtMedium
Q9SN39Arabidopsis thalianasp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic42.300%Swiss-ProtMedium
Q9FND6Arabidopsis thalianasp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410, mitochondrial40.600%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399042.000%Swiss-ProtMedium

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