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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G029920
Reference: TK1151 Chr: Chr05 Coordinates: 8071723-8076493 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2883 bp · TkA05G029920|TK1151|cDNA

ATGTTAGATGCAAATAATGAGCTGGTTAAATGTTACAGGATGGTCAGAGATTGTTTTCATGCAAATCCTCATATTAACCTTAAGTTGCGCCTGATAGGAAAAAGAACCAAAGATGGCAAGACATATAATCTTCCAACTGCGTCTGAAGTAGTTGCTTTAATTGTTGGAGACATCGGTGAAGCGTTTGAAAATCGAGATATCGTTGTCGAAACTTCGTCTGGTTCACTTCAACATGGTGATGATGGTTACAGAGTTGACAT...

CDS

Download CDS FASTA

2883 bp · TkA05G029920|TK1151|CDS

ATGTTAGATGCAAATAATGAGCTGGTTAAATGTTACAGGATGGTCAGAGATTGTTTTCATGCAAATCCTCATATTAACCTTAAGTTGCGCCTGATAGGAAAAAGAACCAAAGATGGCAAGACATATAATCTTCCAACTGCGTCTGAAGTAGTTGCTTTAATTGTTGGAGACATCGGTGAAGCGTTTGAAAATCGAGATATCGTTGTCGAAACTTCGTCTGGTTCACTTCAACATGGTGATGATGGTTACAGAGTTGACAT...

Protein

Download Protein FASTA

960 aa · TkA05G029920|TK1151|PROTEIN

MLDANNELVKCYRMVRDCFHANPHINLKLRLIGKRTKDGKTYNLPTASEVVALIVGDIGEAFENRDIVVETSSGSLQHGDDGYRVDILHRGITSSSNSKRPNCTMREFFAYRIQDRDGPFSLIHNSRRLFQQFLVDAYTMIEKGKNVGNTSISEVGQKMIVAPSFTGGACYMQQNYLDAMSLCKWLFKLKLDALMKDLKEKALFGKVQAVDADGFPVYRRQDDGSYVEKSNVNLDNRNGPDRATVSVVQTNNEGEDNESV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G029920
TK1151 IDTkA05G029920
OH-1004 IDLXL04_005692
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)50.900
Protein coverage (%)TK1151 91.146 / OH-1004 73.640
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G029920
LocationChr05:8071723-8076493 (+)
DescriptionSimilar to pif1: ATP-dependent DNA helicase pif1 (Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005692 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000723 telomere maintenance Biological Process
GO:0001117 protein-DNA-RNA complex disassembly Biological Process
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process
GO:0051276 chromosome organization Biological Process
GO:0000781 chromosome, telomeric region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0031981 nuclear lumen Cellular Component
KEGG gene cross-reference
bba:Bd3546
cje:Cj0945c
rno:367645
tbr:Tb11.01.6420
xla:734585
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.898
Rank 1 · TkA05G029920 · TK1151
Cytoplasm0.162
Rank 2 · TkA05G029920 · TK1151
Mitochondrion0.038
Rank 3 · TkA05G029920 · TK1151
Cell membrane0.013
Rank 4 · TkA05G029920 · TK1151
Extracellular0.008
Rank 5 · TkA05G029920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14214Helitron_like_N108-143 aa
PF14214Helitron_like_N153-184 aa
PF14214Helitron_like_N183-209 aa
PF25199nSTAND_NTPase5476-533 aa
PF05970PIF1477-697 aa
PF13604AAA_30477-599 aa
PF13191AAA_16483-526 aa
PF10923BrxC_BrxD486-534 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G029920PF14214Helitron_like_N1081436.4e-0833.7
TkA05G029920PF14214Helitron_like_N1531846.4e-0833.7
TkA05G029920PF14214Helitron_like_N1832096.4e-0833.7
TkA05G029920PF25199nSTAND_NTPase54765330.07213.6
TkA05G029920PF05970PIF14776971.4e-93313.3
TkA05G029920PF13604AAA_304775999.1e-0626.3
TkA05G029920PF13191AAA_164835260.007917.4
TkA05G029920PF10923BrxC_BrxD4865340.211.3
TkA05G029920PF07693KAP_NTPase4865580.2111.5
TkA05G029920PF13481AAA_254955420.003117.9
TkA05G029920PF13245AAA_194966310.04914.5
TkA05G029920PF13401AAA_224966040.1613.0
TkA05G029920PF09848SLFN-g3_helicase4996760.1811.8
TkA05G029920PF07728AAA_55015330.06513.9
TkA05G029920PF05127NAT10_TcmA_helicase5025190.2212.1
TkA05G029920PF05127NAT10_TcmA_helicase5266020.2212.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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