Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1062 bp · TkA05G023350|TK1151|cDNA
AACTACTCAATCAACATGAAAGACATTCAAACCAAGAAATTAGCTCTTTTAGTAGGGTGCAACTATGCAAACACACCAAATGAGTTACATGGTTGCATAAATGATGTGTTAGCCATTAGACAAGTCCTCATTAGCCGATTTGGGTTCGACCCAACCCACATCCAGCTTCTAACTGATGCACCTGGCTCGCTTGTCATGCCAACCGGTGCAAATATAAAGGATGCACTTATCAGTATGGTTGACCAAGCTGAGCCAGGTGA...
531 bp · TkA05G023350|TK1151|CDS
ATGCACTTATCAGTATGGTTGACCAAGCTGAGCCAGGTGACATTCTTTACTTTCACTATAGTGGTCATGGCACACGAATTCCTTCAATCAAACGACCACACACTTTTCATCATCCAGATGAAGCCATCGTTCCTTGCGATTTTAATCTTATTACAGATATGGATTTCCGAACATAGTGGACCGAGTACCAAAGGGGGCATTCACCATTCTTTCCGATTCCTGCCACAGTGGTGGCCTAATCGACAAAGAAAAAGAACAAA...
Protein
Download Protein FASTA176 aa · TkA05G023350|TK1151|PROTEIN
MHLSVWLTKLSQVTFFTFTIVVMAHEFLQSNDHTLFIIQMKPSFLAILILLQIWISEHSGPSTKGGIHHSFRFLPQWWPNRQRKRTNRSIIFHPKFQFYPHNHQTKNHPFHSILLHLSSLTHINTPDHSTHFLELFGDTASLRFRFPSHELDSIPSLHEDNGILLVGVKQTRVLQI
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G023350 |
|---|---|
| TK1151 ID | TkA05G023350 |
| OH-1004 ID | LXL04_019149 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 96.600 |
| Protein coverage (%) | TK1151 33.523 / OH-1004 18.910Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G023350 |
|---|---|
| Location | Chr05:6330993-6332465 (-) |
| Description | Similar to AMC9: Metacaspase-9 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0006979 response to oxidative stress Biological Process GO:0010225 response to UV-C Biological Process GO:0010421 hydrogen peroxide-mediated programmed cell death Biological Process GO:0012501 programmed cell death Biological Process GO:0042542 response to hydrogen peroxide Biological Process GO:0043068 positive regulation of programmed cell death Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0048046 apoplast Cellular Component |
| KEGG gene cross-reference | ath:AT1G16420 ath:AT1G79320 ath:AT1G79330 ath:AT5G04200 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.