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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G022350
Reference: TK1151 Chr: Chr05 Coordinates: 6068993-6072651 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2527 bp · TkA05G022350|TK1151|cDNA

CTCTCCTTACTTTCCTTCCCTTTCTTTTCTTTTGTCTGCTAAAACTCGGGAACAAAGCGTAAACCTCAAAATATAATTATTTTGTATTAGAGTTTACACCTAAAGTTTTCTATAGTAGTTCACATCATGAACTAGTTAAGAACACCGACTATAGATGAGAAAATCATAAATACAGGAAAAAAAAATGCTTAAAAATAGTTCAGGGCCTTAATGGGCTGCGCTCAAGTTTTTCCCCAACATTTCTCCTTGCTGCCATAACC...

CDS

Download CDS FASTA

1755 bp · TkA05G022350|TK1151|CDS

ATGCATGGACTTTCTGTATATCAAATAAAGGCAATGCTTTATAGCAGTCGGTCCCTGAATTACCTCACAACATATACTCGCGATTCCCAAGTGAGAACGACTGCCCTGTTTATATTACGGTTATCGCGTGGCATTTCGTTATCTGCACATAAGCTGTTTGATAAAAGTCCCCAAAGCCATGTAACTGCTACGCATGACAATGGGTACCAATTCCTGGCATCTTTTCTTCAACAAAACAGGCTAAACAAGAAACCCACAAA...

Protein

Download Protein FASTA

584 aa · TkA05G022350|TK1151|PROTEIN

MHGLSVYQIKAMLYSSRSLNYLTTYTRDSQVRTTALFILRLSRGISLSAHKLFDKSPQSHVTATHDNGYQFLASFLQQNRLNKKPTKFQLCTALNCCAKTHNSLLGSQIHTKILNTGLDQNLYINSSLVNMYAKSGAILDAMRVFNGMEFHDQVSWTSIICGLSQNGQGKEAICLFKQMLKTQIIPNSFTYVSVISGCTDQESVSKCSELLHGHVIKLGHENNKYITSTLIDNYSKCGKIDKAVTLFEGSITKDDILLNS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G022350
TK1151 IDTkA05G022350
OH-1004 IDLXL04_019140
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.800
Protein coverage (%)TK1151 98.801 / OH-1004 91.554
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G022350
LocationChr05:6068993-6072651 (-)
DescriptionSimilar to PCMP-E43: Putative pentatricopeptide repeat-containing protein At3g47840
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g47840 Putative pentatricopeptide repeat-containing protein At3g47840. No verified direct reference in this release
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At3g15130 Putative pentatricopeptide repeat-containing protein At3g15130. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019140 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G24000
ath:AT3G47840
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.719
Rank 1 · TkA05G022350 · TK1151
Plastid0.148
Rank 2 · TkA05G022350 · TK1151
Nucleus0.043
Rank 3 · TkA05G022350 · TK1151
Cytoplasm0.033
Rank 4 · TkA05G022350 · TK1151
Cell membrane0.006
Rank 5 · TkA05G022350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N24-79 aa
PF17177PPR_long79-210 aa
PF23276TPR_2493-149 aa
PF18768RNPP_C109-146 aa
PF13812PPR_3112-149 aa
PF08876DUF1836118-139 aa
PF01535PPR126-149 aa
PF12854PPR_1126-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G022350PF29070MSC6_N24792.6e-0834.1
TkA05G022350PF17177PPR_long792106.2e-1142.8
TkA05G022350PF23276TPR_24931495.7e-0936.7
TkA05G022350PF18768RNPP_C1091460.003417.6
TkA05G022350PF13812PPR_31121493.7e-1143.7
TkA05G022350PF08876DUF18361181390.3511.7
TkA05G022350PF01535PPR1261493.4e-47156.1
TkA05G022350PF12854PPR_11261492.9e-2382.0
TkA05G022350PF24760TPR_IF140_C1261480.04514.9
TkA05G022350PF13041PPR_21271498.3e-40135.4
TkA05G022350PF20431E_motif1281481.1e-1351.9
TkA05G022350PF13041PPR_21521988.3e-40135.4
TkA05G022350PF12854PPR_11521792.9e-2382.0
TkA05G022350PF01535PPR1541813.4e-47156.1
TkA05G022350PF13812PPR_31541993.7e-1143.7
TkA05G022350PF23276TPR_241572475.7e-0936.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9STS9Arabidopsis thalianasp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g4784034.900%Swiss-ProtMedium
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic35.100%Swiss-ProtMedium
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360031.400%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial33.500%Swiss-ProtMedium
P0C898Arabidopsis thalianasp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g1513031.100%Swiss-ProtMedium

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