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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_019140
Reference: OH-1004 Chr: Chr04 Coordinates: 24502129-24505841 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1779 bp · LXL04_019140|LXL04_019140|OH1004|cDNA

ATGCATGGACTTTCTGTATATCAAATAAAGGCAATGCTTTATGGCAGTCGGTCCCTGAATTACCTTACAACATATACTCGCGATTCCCAAGTGAGAACGACTGCCCTGTTTATATTACGGTTATCGCGTGGCATTTCGTTATCTGCACATAAGCTGTTTGATAAAAGTCCCCAAAGCCATGTAACTAATGGGTACCAATTCCTGGCATCTTTTCTTCAACAAAACAGGCTAAACAAGAAACCCACAAAGTTCCAACTTTG...

CDS

Download CDS FASTA

1779 bp · LXL04_019140|LXL04_019140|OH1004|CDS

ATGCATGGACTTTCTGTATATCAAATAAAGGCAATGCTTTATGGCAGTCGGTCCCTGAATTACCTTACAACATATACTCGCGATTCCCAAGTGAGAACGACTGCCCTGTTTATATTACGGTTATCGCGTGGCATTTCGTTATCTGCACATAAGCTGTTTGATAAAAGTCCCCAAAGCCATGTAACTAATGGGTACCAATTCCTGGCATCTTTTCTTCAACAAAACAGGCTAAACAAGAAACCCACAAAGTTCCAACTTTG...

Protein

Download Protein FASTA

592 aa · LXL04_019140|LXL04_019140|OH1004|PROTEIN

MHGLSVYQIKAMLYGSRSLNYLTTYTRDSQVRTTALFILRLSRGISLSAHKLFDKSPQSHVTNGYQFLASFLQQNRLNKKPTKFQLCTALNCCAKTHNSLLGSQIHTKILNTGLDQNLYINSSLVNMYAKSGAILDAMRVFNGMEFHDQVSWTSIICGLSQNGQGKEAICLFKQMLKTQIIPNSFTYVSVISGCTDQESVSKCSELLHGHVIKLGHENNKYITSTLIDNYSKCGKIDKAVTLFEGSITKDDILLNSMISA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_019140
TK1151 IDTkA05G022350
OH-1004 IDLXL04_019140
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.800
Protein coverage (%)TK1151 98.801 / OH-1004 91.554
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_019140
LocationChr04:24502129-24505841 (-)
DescriptionSimilar to PCMP-E43: Putative pentatricopeptide repeat-containing protein At3g47840
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g24000 Pentatricopeptide repeat-containing protein At3g24000, mitochondrial. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At3g47840 Putative pentatricopeptide repeat-containing protein At3g47840. No verified direct reference in this release
At4g37170 Pentatricopeptide repeat-containing protein At4g37170. No verified direct reference in this release
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019140 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G24000
ath:AT3G47840
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.750
Rank 1 · LXL04_019140 · OH-1004
Plastid0.142
Rank 2 · LXL04_019140 · OH-1004
Nucleus0.044
Rank 3 · LXL04_019140 · OH-1004
Cytoplasm0.039
Rank 4 · LXL04_019140 · OH-1004
Cell membrane0.008
Rank 5 · LXL04_019140 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2148-194 aa
PF01535.27PPR150-177 aa
PF29070.1MSC6_N174-346 aa
PF13041.13PPR_2252-296 aa
PF01535.27PPR255-281 aa
PF17177.11PPR_long270-423 aa
PF12854.14PPR_1396-425 aa
PF01535.27PPR402-426 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_019140PF13041.13PPR_21481949.7e-35119.2
LXL04_019140PF01535.27PPR1501776.6e-41136.4
LXL04_019140PF29070.1MSC6_N1743464.7e-0730.0
LXL04_019140PF13041.13PPR_22522969.7e-35119.2
LXL04_019140PF01535.27PPR2552816.6e-41136.4
LXL04_019140PF17177.11PPR_long2704237.5e-1142.5
LXL04_019140PF12854.14PPR_13964256.9e-2380.8
LXL04_019140PF01535.27PPR4024266.6e-41136.4
LXL04_019140PF20431.5E_motif4445071.2e-1351.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LIQ7Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g24000, mitochondrial34.624%Swiss-Protmoderate database homology
Q9SVP7Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g1365032.347%Swiss-Protmoderate database homology
Q9STS9Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At3g4784033.874%Swiss-Protmoderate database homology
O23169Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g3717031.086%Swiss-Protmoderate database homology
Q9SIT7Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g1360030.756%Swiss-Protmoderate database homology

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