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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G018850
Reference: TK1151 Chr: Chr05 Coordinates: 5188207-5191307 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1636 bp · TkA05G018850|TK1151|cDNA

ATTATTTTAAACCAAAAAAAAGAAAAAAAAAACTTTTCTTCACCGTCTCTGATGAAGTACTCCTCAAGAAATCGTTGATATTCTCATTTTCCCGTGTTGCTGCTCAATCCTCCCAATCTTCCGCCACCACTGAGCAACAATGGCAGCAACGATGGTTCTCGACCCTAAACCAGCATCATCTTCCCCACCACCAACCCTCCCCTCACCCTATTCCACCATCGACGCCGTCCTGACGGATTCCGAAGACGATCTCTACACTC...

CDS

Download CDS FASTA

1251 bp · TkA05G018850|TK1151|CDS

ATGGCAGCAACGATGGTTCTCGACCCTAAACCAGCATCATCTTCCCCACCACCAACCCTCCCCTCACCCTATTCCACCATCGACGCCGTCCTGACGGATTCCGAAGACGATCTCTACACTCGTCTCAAATCCCTAGAACGCCAAATCGAATTCATCGAAATCCAAGAAGAGTATGTCAAAGATGAGCAGAAAAACCTAAAACGTGAACTGCTGAGGTCGCAAGAGGAGGTAAAACGGATCCAATCGGTGCCGCTCGTGAT...

Protein

Download Protein FASTA

416 aa · TkA05G018850|TK1151|PROTEIN

MAATMVLDPKPASSSPPPTLPSPYSTIDAVLTDSEDDLYTRLKSLERQIEFIEIQEEYVKDEQKNLKRELLRSQEEVKRIQSVPLVIGQFMEMIDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYSDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAII...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G018850
TK1151 IDTkA05G018850
OH-1004 IDLXL04_000720
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)95.300
Protein coverage (%)TK1151 96.154 / OH-1004 64.205
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G018850
LocationChr05:5188207-5191307 (+)
DescriptionSimilar to 26S proteasome regulatory subunit 6B homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g58290 The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins.
A mutation in the Proteosomal Regulatory Particle AAA-ATPase-3 in Arabidopsis impairs the light-specific hypocotyl elongation response elicited by a glutamate receptor agonist, BMAA.2009 · DOI: 10.1007/s11103-009-9489-7

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000720 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0000502 proteasome complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0008540 proteasome regulatory particle, base subcomplex Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT5G58290
han:110873361
rno:117262
sot:102577768
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.554
Rank 1 · TkA05G018850 · TK1151
Nucleus0.491
Rank 2 · TkA05G018850 · TK1151
Mitochondrion0.076
Rank 3 · TkA05G018850 · TK1151
Cell membrane0.045
Rank 4 · TkA05G018850 · TK1151
Peroxisome0.036
Rank 5 · TkA05G018850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01025GrpE30-96 aa
PF11932DUF345031-94 aa
PF30147SSP135-123 aa
PF13479AAA_2438-70 aa
PF03225Viral_Hsp9039-98 aa
PF14532Sigma54_activ_242-76 aa
PF23130IcmW44-95 aa
PF13173AAA_1447-91 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G018850PF01025GrpE30960.08113.3
TkA05G018850PF11932DUF345031940.03214.2
TkA05G018850PF30147SSP1351230.03514.2
TkA05G018850PF13479AAA_2438700.006616.9
TkA05G018850PF03225Viral_Hsp9039980.1111.7
TkA05G018850PF14532Sigma54_activ_242760.2212.5
TkA05G018850PF23130IcmW44950.1512.9
TkA05G018850PF13173AAA_1447910.001619.2
TkA05G018850PF05673DUF81548722.1e-0524.6
TkA05G018850PF06745ATPase49680.1312.3
TkA05G018850PF13086AAA_1153810.07213.6
TkA05G018850PF16450Prot_ATP_ID_OB_C871425.3e-1349.3
TkA05G018850PF13191AAA_16891448.9e-0833.6
TkA05G018850PF00158Sigma54_activat991230.001718.8
TkA05G018850PF20209DUF65701281960.1912.8
TkA05G018850PF05673DUF8151602652.1e-0524.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SEI4Arabidopsis thalianasp|Q9SEI4|PRS6B_ARATH 26S proteasome regulatory subunit 6B homolog87.400%Swiss-ProtHigh

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