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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G016140
Reference: TK1151 Chr: Chr05 Coordinates: 4559822-4563287 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3116 bp · TkA05G016140|TK1151|cDNA

AAAACAAAGAGTTTAAAGGGGTCTTTATGCATGTGCACTAAAGTATAGATGCTATTTTAGTAGTATTTTACTTGCATTTGAACGGCGATTACATGAAAGTATGAAGCTACTTCTCTCCGCTCAAACTCGGAAGTAATATTGGCGCCAGGAATGAAAATCGCCGAGATCTCTTCGCCGGATCTCCGCCAGACGCAGTCACAGGATCCGAAATCAGATGTACTTTGCAAACTAGATGCATTAACAACTGAACTCGAACGCCA...

CDS

Download CDS FASTA

2805 bp · TkA05G016140|TK1151|CDS

ATGAAAATCGCCGAGATCTCTTCGCCGGATCTCCGCCAGACGCAGTCACAGGATCCGAAATCAGATGTACTTTGCAAACTAGATGCATTAACAACTGAACTCGAACGCCACTCGGCGGAGTCTCCTTTGAAGGAGTCTGTCCCCGCTGCTCTCCGCCACGGACTGAATCAACTAACTTCACTCGCACCATTCCAGAACTCCGTGAAGCTGCAGATATGGAAGTTGAGTTACCGTTTATGGAACGCATGCGTTGATCTCTT...

Protein

Download Protein FASTA

934 aa · TkA05G016140|TK1151|PROTEIN

MKIAEISSPDLRQTQSQDPKSDVLCKLDALTTELERHSAESPLKESVPAALRHGLNQLTSLAPFQNSVKLQIWKLSYRLWNACVDLFNFVRSSSSKITEEHAKLRQCCADLLFLAIDVSGVPSPYFKCASFFYKTGIIWHELRKYDLASNCFEKATDLTSKVEITNVSDRDERRLLLDLNIARSKTAWEVSDRNLAINLLNRSKRVLFGIGENYMALANQYTNFGKLLLSKNEVSAVNEALKLMNEALELCEQGLRNVKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G016140
TK1151 IDTkA05G016140
OH-1004 IDLXL04_019069
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G016140
LocationChr05:4559822-4563287 (-)
DescriptionSimilar to ZIP4: TPR repeat-containing protein ZIP4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g48390 Required for meiotic chromosome segregation.
Zip4/Spo22 is required for class I CO formation but not for synapsis completion in Arabidopsis thaliana.2007 · DOI: 10.1371/journal.pgen.0030083
Homologous chromosome pairing is completed in crossover defective atzip4 mutant.2008 · DOI: 10.1016/j.bbrc.2008.03.036

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0890900 Required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis.
ZIP4 in homologous chromosome synapsis and crossover formation in rice meiosis.2012 · DOI: 10.1242/jcs.090993
UniProt: A2WXU2 Required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019069 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000712 resolution of meiotic recombination intermediates Biological Process
GO:0006311 meiotic gene conversion Biological Process
GO:0007060 male meiosis chromosome segregation Biological Process
GO:0007129 homologous chromosome pairing at meiosis Biological Process
GO:0007130 synaptonemal complex assembly Biological Process
GO:0007131 reciprocal meiotic recombination Biological Process
GO:0007140 male meiotic nuclear division Biological Process
GO:0007143 female meiotic nuclear division Biological Process
GO:0071139 resolution of DNA recombination intermediates Biological Process
GO:0090173 regulation of synaptonemal complex assembly Biological Process
GO:0000801 central element Cellular Component
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT5G48390
dosa:Os01g0890800
dosa:Os01g0890900
hsa:56159
osa:4324913
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.757
Rank 1 · TkA05G016140 · TK1151
Cytoplasm0.269
Rank 2 · TkA05G016140 · TK1151
Mitochondrion0.037
Rank 3 · TkA05G016140 · TK1151
Cell membrane0.027
Rank 4 · TkA05G016140 · TK1151
Endoplasmic reticulum0.022
Rank 5 · TkA05G016140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04212MIT76-109 aa
PF08631SPO22125-174 aa
PF23300HEAT_Nup120129-178 aa
PF07719TPR_2131-158 aa
PF00515TPR_1132-157 aa
PF13181TPR_8140-159 aa
PF13424TPR_12141-158 aa
PF04212MIT144-161 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G016140PF04212MIT761093.38.6
TkA05G016140PF08631SPO221251742.3e-41142.8
TkA05G016140PF23300HEAT_Nup1201291780.1412.7
TkA05G016140PF07719TPR_21311582.3e-1040.5
TkA05G016140PF00515TPR_11321570.0001222.5
TkA05G016140PF13181TPR_81401590.003818.0
TkA05G016140PF13424TPR_121411580.0002322.0
TkA05G016140PF04212MIT1441613.38.6
TkA05G016140PF08631SPO221864592.3e-41142.8
TkA05G016140PF04212MIT2372643.38.6
TkA05G016140PF07719TPR_22382522.3e-1040.5
TkA05G016140PF13424TPR_122382520.0002322.0
TkA05G016140PF13181TPR_82382520.003818.0
TkA05G016140PF13424TPR_122392530.0002322.0
TkA05G016140PF00515TPR_12412550.0001222.5
TkA05G016140PF12895ANAPC32793320.0001123.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
B0M1H3Arabidopsis thalianasp|B0M1H3|ZIP4L_ARATH TPR repeat-containing protein ZIP456.000%Swiss-ProtHigh
Q5N829Oryza sativa subsp. japonicasp|Q5N829|ZIP4L_ORYSJ TPR repeat-containing protein ZIP442.800%Swiss-ProtMedium
A2WXU2Oryza sativa subsp. indicasp|A2WXU2|ZIP4L_ORYSI TPR repeat-containing protein ZIP442.600%Swiss-ProtMedium

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