TkA05G011650 | RubberDandelionOmics

Gene overview

TkA05G011650

Reference: TK1151 Chr: Chr05 Coordinates: 3327697-3332228 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2602 bp · TkA05G011650|TK1151|cDNA

CTGAATTTTACATAAAAAATTGATAATATTATGATCAATCGATCATCCACTTTACCTCGCGAGCAACCGACAACCGTAACACCTTATGATCACATCTTACCCTTTACTTCGTATTATCTTCAAATTCTACCCTTCACAATTAAGTTATGACATACTAGCCCCCCTACTTGTTTATCTTTATTGCAGTCGTCGGTCCAACAGTTAACGAAGCCATACGCGGTAATACTGGCGAACATCATACGCACCTACTAATTTCTGTT...

CDS

Download CDS FASTA

1272 bp · TkA05G011650|TK1151|CDS

ATGGACAGGATAGTCGGAGGAAAGTACAAACTCGGCCGTAAGATCGGAAGTGGATCCTTCGGTGAAATTCATCTAGCAACGCATGTTGATACGTTTGAAATCGTCGCCATCAAGATCGAGAACAATAAGACAAAGCATCCGCAACTTCTATATGAAGCCAAGTTATACAACATTCTTCAGGGAGGAAGTGGTATACCTGCCATAAAATGGTCCGGTGTAGATGGAGAGGACAACATTTTAGTACTCGATTTGCTGGGACC...

Protein

Download Protein FASTA

423 aa · TkA05G011650|TK1151|PROTEIN

MDRIVGGKYKLGRKIGSGSFGEIHLATHVDTFEIVAIKIENNKTKHPQLLYEAKLYNILQGGSGIPAIKWSGVDGEDNILVLDLLGPSLEDLFVYCGRKFQLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDATTHRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKLSTPIEVLCKSHPVEFASYFHYCHSLTF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G011650`
TK1151 ID	TkA05G011650
OH-1004 ID	LXL04_019018
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G011650

Location Chr05:3327697-3332228 (+)

Description Similar to CKL3: Casein kinase 1-like protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28880`	Protein kinase involved in blue light responses (e.g. hypocotyl elongation and flowering) by phosphorylating CRY2 to reduce its stability.	No verified direct reference in this release
`At4g28860`	Protein kinase involved in blue light responses (e.g. hypocotyl elongation and flowering) by phosphorylating CRY2 to reduce its stability.	No verified direct reference in this release
`At5g57015`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At4g26100`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At5g44100`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019018 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001558 regulation of cell growth Biological Process

GO:0006897 endocytosis Biological Process

GO:0007165 signal transduction Biological Process

GO:0009637 response to blue light Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009785 blue light signaling pathway Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0051510 regulation of unidimensional cell growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT4G26100

ath:AT4G28540

ath:AT4G28860

ath:AT4G28880

ath:AT5G57015

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.642

Rank 1 · TkA05G011650 · TK1151

Nucleus0.308

Rank 2 · TkA05G011650 · TK1151

Cell membrane0.129

Rank 3 · TkA05G011650 · TK1151

Mitochondrion0.063

Rank 4 · TkA05G011650 · TK1151

Golgi apparatus0.037

Rank 5 · TkA05G011650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase9-227 aa

PF07714PK_Tyr_Ser-Thr10-266 aa

PF03109ABC115-45 aa

PF03109ABC176-161 aa

PF17667Pkinase_fungal109-206 aa

PF06293Kdo112-155 aa

PF01636APH121-153 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G011650	`PF00069`	Pkinase	9	227	5.6e-27	95.5
TkA05G011650	`PF07714`	PK_Tyr_Ser-Thr	10	266	1e-14	55.2
TkA05G011650	`PF03109`	ABC1	15	45	1.3e-05	25.3
TkA05G011650	`PF03109`	ABC1	76	161	1.3e-05	25.3
TkA05G011650	`PF17667`	Pkinase_fungal	109	206	1.3e-08	34.7
TkA05G011650	`PF06293`	Kdo	112	155	0.07	13.3
TkA05G011650	`PF01636`	APH	121	153	0.0029	18.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93Z18`	Arabidopsis thaliana	sp\|Q93Z18\|CKL3_ARATH Casein kinase 1-like protein 3	81.600%	Swiss-Prot	High
`Q8LPI7`	Arabidopsis thaliana	sp\|Q8LPI7\|CKL4_ARATH Casein kinase 1-like protein 4	80.900%	Swiss-Prot	High
`Q8VYK9`	Arabidopsis thaliana	sp\|Q8VYK9\|CKL12_ARATH Casein kinase 1-like protein 12	76.600%	Swiss-Prot	High
`P42158`	Arabidopsis thaliana	sp\|P42158\|CKL1_ARATH Casein kinase 1-like protein 1	73.800%	Swiss-Prot	High
`Q9FFH8`	Arabidopsis thaliana	sp\|Q9FFH8\|CKL7_ARATH Casein kinase 1-like protein 7	72.600%	Swiss-Prot	High

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