TkA05G004600 | RubberDandelionOmics

Gene overview

TkA05G004600

Reference: TK1151 Chr: Chr05 Coordinates: 1353545-1356084 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1493 bp · TkA05G004600|TK1151|cDNA

CAACGGTTGTGTTTGGAGCAAAATAGGCCACAACGATACATGGTGGTTTTAGCGAATAGATAATGGAGGGAAAGCTTTCGTCGGTAGCTAAGACCTTAAAACCTTCCCCTATCCAACAACTATCTTATCTGGCTGAACGCAGCAATGCCATTAACCTCGCCGAAGGTTTCCCTGATTTCCCGGCACCTCCCCATATCAAGGACGCTGCCGTATCCGCTATTACCTCCGATTTTAACCAATACAGGCATGTTCAGGGAATA...

CDS

Download CDS FASTA

1188 bp · TkA05G004600|TK1151|CDS

ATGGAGGGAAAGCTTTCGTCGGTAGCTAAGACCTTAAAACCTTCCCCTATCCAACAACTATCTTATCTGGCTGAACGCAGCAATGCCATTAACCTCGCCGAAGGTTTCCCTGATTTCCCGGCACCTCCCCATATCAAGGACGCTGCCGTATCCGCTATTACCTCCGATTTTAACCAATACAGGCATGTTCAGGGAATATGTGATCTGCTTGCAGATAAAATGAAGCAAATGCATGGCTCAGATGTTGATCCTTTGACAGA...

Protein

Download Protein FASTA

395 aa · TkA05G004600|TK1151|PROTEIN

MEGKLSSVAKTLKPSPIQQLSYLAERSNAINLAEGFPDFPAPPHIKDAAVSAITSDFNQYRHVQGICDLLADKMKQMHGSDVDPLTDIAICCGQTEVFAATMFAILNPGDEVILFDPCFETYETYILMAGGVPVYVALDPPYWRLDEVKLADALTAKTKALVLNSPHNPTGKVCNMEELQIIAEYCRKNDCIAVTDEVYEHLTYNNKPHISLASLPEMQKRTIITSSLSKTYSVTGWRVGWAIGPSCIVLPIRNIHAKVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G004600`
TK1151 ID	TkA05G004600
OH-1004 ID	LXL04_018925
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.200
Protein coverage (%)	TK1151 99.747 / OH-1004 95.522 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA05G004600`
Location	Chr05:1353545-1356084 (+)
Description	Similar to KYAT1: Kynurenine--oxoglutarate transaminase 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018925` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006103 2-oxoglutarate metabolic process Biological Process GO:0006520 amino acid metabolic process Biological Process GO:0009617 response to bacterium Biological Process GO:0042867 pyruvate catabolic process Biological Process GO:0070189 kynurenine metabolic process Biological Process GO:0097053 L-kynurenine catabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005829 cytosol Cellular Component GO:0003723 RNA binding Molecular Function GO:0008483 transaminase activity Molecular Function
KEGG gene cross-reference	ddi:DDB_G0287269 ecj:JW0593 eco:b0600 ecoc:C3026_03000 hsa:56267 hsa:883 rno:311844 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.506

Rank 1 · TkA05G004600 · TK1151

Peroxisome0.184

Rank 2 · TkA05G004600 · TK1151

Mitochondrion0.167

Rank 3 · TkA05G004600 · TK1151

Nucleus0.161

Rank 4 · TkA05G004600 · TK1151

Plastid0.090

Rank 5 · TkA05G004600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00155Aminotran_1_228-348 aa

PF01053Cys_Met_Meta_PP88-199 aa

PF01041DegT_DnrJ_EryC190-184 aa

PF00266Aminotran_5139-198 aa

PF01212Beta_elim_lyase148-196 aa

PF01053Cys_Met_Meta_PP324-344 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G004600	`PF00155`	Aminotran_1_2	28	348	1.4e-51	176.5
TkA05G004600	`PF01053`	Cys_Met_Meta_PP	88	199	6.5e-06	25.7
TkA05G004600	`PF01041`	DegT_DnrJ_EryC1	90	184	2.7e-09	37.5
TkA05G004600	`PF00266`	Aminotran_5	139	198	0.11	12.1
TkA05G004600	`PF01212`	Beta_elim_lyase	148	196	0.16	11.9
TkA05G004600	`PF01053`	Cys_Met_Meta_PP	324	344	6.5e-06	25.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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