LXL04_018925 | RubberDandelionOmics

Gene overview

LXL04_018925

Reference: OH-1004 Chr: Chr04 Coordinates: 20112849-20116135 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1209 bp · LXL04_018925|LXL04_018925|OH1004|cDNA

ATGGAGGGAAAGCTTTCGTCGGTAGCTAAGACCTTAAAACCTTCCCCTATCCAACAACTATCTTATCTGGCTGAACGCAGCAATGCCATTAACCTCGCCGAAGGTTTCCCTGATTTCCCGGCACCTCCCCATATCAAGGACGCTGCCGTATCCGCTATTACCTCCGATTTTAACCAATACAGGCATGTTCAGGGAATATGTGATCTGCTTGCAGATAAAATGAAGCAAATGCATGGCTCAGATGTTGATCCTTTGACAGA...

CDS

Download CDS FASTA

1209 bp · LXL04_018925|LXL04_018925|OH1004|CDS

ATGGAGGGAAAGCTTTCGTCGGTAGCTAAGACCTTAAAACCTTCCCCTATCCAACAACTATCTTATCTGGCTGAACGCAGCAATGCCATTAACCTCGCCGAAGGTTTCCCTGATTTCCCGGCACCTCCCCATATCAAGGACGCTGCCGTATCCGCTATTACCTCCGATTTTAACCAATACAGGCATGTTCAGGGAATATGTGATCTGCTTGCAGATAAAATGAAGCAAATGCATGGCTCAGATGTTGATCCTTTGACAGA...

Protein

Download Protein FASTA

402 aa · LXL04_018925|LXL04_018925|OH1004|PROTEIN

MEGKLSSVAKTLKPSPIQQLSYLAERSNAINLAEGFPDFPAPPHIKDAAVSAITSDFNQYRHVQGICDLLADKMKQMHGSDVDPLTDIAICCGQTEVFAATMFAILNPGDEVILFDPCFETYETYILMAGGVPVYVALDPPYWRLDEVKLADALTAKTKALVLNSPHNPTGKVCNMEELQIIAEYCRKNDCIAVTDEVYEHLTYNNKPHISLASLPEMQKRTIITSSLVGWAIGPSCIVLPIRNIHAKVTDSAPAPFQEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018925`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_018925`
Location	Chr04:20112849-20116135 (+)
Description	Similar to KYAT1: Kynurenine--oxoglutarate transaminase 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018925` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006103 2-oxoglutarate metabolic process Biological Process GO:0006520 amino acid metabolic process Biological Process GO:0009617 response to bacterium Biological Process GO:0042867 pyruvate catabolic process Biological Process GO:0070189 kynurenine metabolic process Biological Process GO:0097053 L-kynurenine catabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005829 cytosol Cellular Component GO:0003723 RNA binding Molecular Function GO:0008483 transaminase activity Molecular Function
KEGG gene cross-reference	ddi:DDB_G0287269 ecj:JW0593 eco:b0600 ecoc:C3026_03000 hsa:56267 hsa:883 rno:311844 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.551

Rank 1 · LXL04_018925 · OH-1004

Nucleus0.190

Rank 2 · LXL04_018925 · OH-1004

Peroxisome0.174

Rank 3 · LXL04_018925 · OH-1004

Mitochondrion0.136

Rank 4 · LXL04_018925 · OH-1004

Plastid0.065

Rank 5 · LXL04_018925 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00155.28Aminotran_1_228-339 aa

PF01053.27Cys_Met_Meta_PP88-199 aa

PF01041.24DegT_DnrJ_EryC191-184 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018925	`PF00155.28`	Aminotran_1_2	28	339	4.1e-40	138.8
LXL04_018925	`PF01053.27`	Cys_Met_Meta_PP	88	199	6.7e-06	25.6
LXL04_018925	`PF01041.24`	DegT_DnrJ_EryC1	91	184	2.7e-09	37.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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