TkA05G004290 | RubberDandelionOmics

Gene overview

TkA05G004290

Reference: TK1151 Chr: Chr05 Coordinates: 1288585-1292693 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

871 bp · TkA05G004290|TK1151|cDNA

TAACTTCCTAAACAGAATGTTTTAGTGATGTGGCGGTCCGCCATGGACGACTGGACGTGCACACCACAATCAAATGCATGTTCAGGGAATATGTGATCTGCTTGCAGATAAAATGAAGCAAATGCATGGCTTAGATGTTGATCCTTTAACAGATATTGCCATCTGCTGTGGCCAGACTGAAGCATTTGCTGCCACAATGTTTGCAATACTCAACCCCGGTGATGAAGTAATACTGTTTGATCCTTGTTTTGAAACGTATG...

CDS

Download CDS FASTA

396 bp · TkA05G004290|TK1151|CDS

ATGCATGTTCAGGGAATATGTGATCTGCTTGCAGATAAAATGAAGCAAATGCATGGCTTAGATGTTGATCCTTTAACAGATATTGCCATCTGCTGTGGCCAGACTGAAGCATTTGCTGCCACAATGTTTGCAATACTCAACCCCGGTGATGAAGTAATACTGTTTGATCCTTGTTTTGAAACGTATGAAACATGTATTTTAATGGCTGGAGGAGTCCCTGTGTATGTAGCCCTAGACCCACCTTACTGGAGACTTGATGA...

Protein

Download Protein FASTA

131 aa · TkA05G004290|TK1151|PROTEIN

MHVQGICDLLADKMKQMHGLDVDPLTDIAICCGQTEAFAATMFAILNPGDEVILFDPCFETYETCILMAGGVPVYVALDPPYWRLDEVKLADAFTTKTKALVLNSPHNPTGKVCNMEELQIIAEFAEKRIA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G004290`
TK1151 ID	TkA05G004290
OH-1004 ID	LXL04_018925
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	93.700
Protein coverage (%)	TK1151 96.947 / OH-1004 31.592 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA05G004290`
Location	Chr05:1288585-1292693 (+)
Description	Similar to KYAT1: Kynurenine--oxoglutarate transaminase 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018925` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006103 2-oxoglutarate metabolic process Biological Process GO:0006520 amino acid metabolic process Biological Process GO:0009617 response to bacterium Biological Process GO:0042867 pyruvate catabolic process Biological Process GO:0070189 kynurenine metabolic process Biological Process GO:0097053 L-kynurenine catabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005829 cytosol Cellular Component GO:0003723 RNA binding Molecular Function GO:0008483 transaminase activity Molecular Function
KEGG gene cross-reference	ddi:DDB_G0287269 ecj:JW0593 eco:b0600 ecoc:C3026_03000 hsa:56267 hsa:883 rno:311844 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.403

Rank 1 · TkA05G004290 · TK1151

Plastid0.235

Rank 2 · TkA05G004290 · TK1151

Peroxisome0.139

Rank 3 · TkA05G004290 · TK1151

Nucleus0.129

Rank 4 · TkA05G004290 · TK1151

Mitochondrion0.097

Rank 5 · TkA05G004290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00155Aminotran_1_29-128 aa

PF01053Cys_Met_Meta_PP28-123 aa

PF01276OKR_DC_132-77 aa

PF01041DegT_DnrJ_EryC135-124 aa

PF01212Beta_elim_lyase86-128 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G004290	`PF00155`	Aminotran_1_2	9	128	7.9e-22	78.6
TkA05G004290	`PF01053`	Cys_Met_Meta_PP	28	123	2.1e-05	24.0
TkA05G004290	`PF01276`	OKR_DC_1	32	77	0.045	13.2
TkA05G004290	`PF01041`	DegT_DnrJ_EryC1	35	124	1.9e-10	41.2
TkA05G004290	`PF01212`	Beta_elim_lyase	86	128	0.24	11.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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