TkA05G003930 | RubberDandelionOmics

Gene overview

TkA05G003930

Reference: TK1151 Chr: Chr05 Coordinates: 1171534-1175170 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2587 bp · TkA05G003930|TK1151|cDNA

CTTAATCAACTCACAAGCTCATATTATATTATTATTATTTATGTTTATCTGAGACATAATACAAAGTTATAAAGCGGTTTAACGATAATTTAATATGAGTTTATATTTCGATGTCTGTTAAAGTTTAACAAACATGTAGACAATAAGCCGTTAGAAGTCTGAATATAATAGGCAGTAATGCTTTATTTAGAATTCCCATGGAGGGACTTTCCGTAAATGGGAAATGATGAATTGAACTGTCTGCTTTACTTCCCCCAATT...

CDS

Download CDS FASTA

783 bp · TkA05G003930|TK1151|CDS

ATGATAGAGACTATATTAAAGAGCAGCAATCTGTTAGCAACATTGGTAAATGACGTTCTTGACCTTTCTAGGCTTGAAGATGGAAGCTTGGAACTTGAACATGAAGTGTTTAATCTTCATGGGTTGTTCAGAGAGGTTGTGAGATTGATAAATCCTATTGCATCTGTGAAAAACACATCCATGACATTGAATTGTGATCTTGATTTACCTGCGTTTGGGGTTGGAGATGAAAAAAGACTTATGCAGATTATATTGAATGT...

Protein

Download Protein FASTA

260 aa · TkA05G003930|TK1151|PROTEIN

MIETILKSSNLLATLVNDVLDLSRLEDGSLELEHEVFNLHGLFREVVRLINPIASVKNTSMTLNCDLDLPAFGVGDEKRLMQIILNVVGNAVKFTKGGVVSIQASVLSPDYLQEWQTPEFCPTLTDGLFYLLVQVKDSGSGIKQQDIPHIFTKFSEPRSASNRTTSTGAGLGLAICKRFVSMMGGHIWIESGGLGKGTTVAFLVKLGQCNYQNDLTAQQLVSRPKSRAHQGSGELIKHRQIEREDYRGAGGSFPHDHNSF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G003930`
TK1151 ID	TkA05G003930
OH-1004 ID	LXL04_026423
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	65.200
Protein coverage (%)	TK1151 79.615 / OH-1004 27.321 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G003930

Location Chr05:1171534-1175170 (-)

Description Similar to ETR1: Ethylene receptor 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40940`	Ethylene receptor related to bacterial two-component regulators.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XL32`	Ethylene receptor related to bacterial two-component regulators.	No verified direct reference in this release
`Os03g0701700`	Ethylene receptor related to bacterial two-component regulators.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026423 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010105 negative regulation of ethylene-activated signaling pathway Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0000155 phosphorelay sensor kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0038199 ethylene receptor activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0051740 ethylene binding Molecular Function

KEGG gene cross-reference

mdm:103401284

sly:606298

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.429

Rank 1 · TkA05G003930 · TK1151

Nucleus0.244

Rank 2 · TkA05G003930 · TK1151

Mitochondrion0.156

Rank 3 · TkA05G003930 · TK1151

Endoplasmic reticulum0.131

Rank 4 · TkA05G003930 · TK1151

Cell membrane0.104

Rank 5 · TkA05G003930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00512HisKA2-28 aa

PF00512HisKA51-63 aa

PF02518HATPase_c75-206 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G003930	`PF00512`	HisKA	2	28	0.00075	20.2
TkA05G003930	`PF00512`	HisKA	51	63	0.00075	20.2
TkA05G003930	`PF02518`	HATPase_c	75	206	5.5e-26	91.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38846`	Arabidopsis thaliana	sp\|Q38846\|ERS1_ARATH Ethylene response sensor 1	63.300%	Swiss-Prot	High
`A2XL32`	Oryza sativa subsp. indica	sp\|A2XL32\|ERS1_ORYSI Probable ethylene response sensor 1	59.200%	Swiss-Prot	High
`Q53RH0`	Oryza sativa subsp. japonica	sp\|Q53RH0\|ERS1_ORYSJ Probable ethylene response sensor 1	59.200%	Swiss-Prot	High

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