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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G505160
Reference: TK1151 Chr: Chr04 Coordinates: 127604426-127605960 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

864 bp · TkA04G505160|TK1151|cDNA

ATGGGCGCCGCCACTCCATTGCAGCTCATATCTTCCTCTCGTTTTCTCCCGTGTTCGGCAGTAATCCACCAGCATTGGCTTCCACTCGCTCGTGCTATCTTTCTCGCGACTAAGAACCAACGACATCCCTCCTTGTGTCGTCCTTTACTGCCGAGGAGGAACATCGCCACCGGAGCACCTCTTGTCGATCTCCTTCCCTGCTACCTGTTGTCGACGAGAGAAACATACCATGCACCGGTTGATCCTAAGATGCATTATAA...

CDS

Download CDS FASTA

864 bp · TkA04G505160|TK1151|CDS

ATGGGCGCCGCCACTCCATTGCAGCTCATATCTTCCTCTCGTTTTCTCCCGTGTTCGGCAGTAATCCACCAGCATTGGCTTCCACTCGCTCGTGCTATCTTTCTCGCGACTAAGAACCAACGACATCCCTCCTTGTGTCGTCCTTTACTGCCGAGGAGGAACATCGCCACCGGAGCACCTCTTGTCGATCTCCTTCCCTGCTACCTGTTGTCGACGAGAGAAACATACCATGCACCGGTTGATCCTAAGATGCATTATAA...

Protein

Download Protein FASTA

287 aa · TkA04G505160|TK1151|PROTEIN

MGAATPLQLISSSRFLPCSAVIHQHWLPLARAIFLATKNQRHPSLCRPLLPRRNIATGAPLVDLLPCYLLSTRETYHAPVDPKMHYKKANPISFSTWSPPSATTPPCAATHRHLVVAVRRREGATRRNDERGSVRGNLRTAVGRLQFAGNLFLFLSFGRSSSPNTAVNHHRNRRSPSPSHEQQRRPPPLKLLSLTLSIERPDNLNRPPCLRYRCRKEERAAGIAVKETRRKKPPESFTSPETAPRPPEILVTVVYGLWCS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G505160
TK1151 IDTkA04G505160
OH-1004 IDLXL04_007874
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)88.500
Protein coverage (%)TK1151 21.254 / OH-1004 15.803
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G505160
LocationChr04:127604426-127605960 (-)
DescriptionSimilar to WEX: Werner Syndrome-like exonuclease
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007874 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006139 nucleobase-containing compound metabolic process Biological Process
GO:0006364 rRNA processing Biological Process
GO:0030490 maturation of SSU-rRNA Biological Process
GO:0042274 ribosomal small subunit biogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0032040 small-subunit processome Cellular Component
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003723 RNA binding Molecular Function
GO:0008408 3'-5' exonuclease activity Molecular Function
KEGG gene cross-reference
ath:AT4G13870
hsa:134430
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.446
Rank 1 · TkA04G505160 · TK1151
Cytoplasm0.388
Rank 2 · TkA04G505160 · TK1151
Cell membrane0.226
Rank 3 · TkA04G505160 · TK1151
Endoplasmic reticulum0.092
Rank 4 · TkA04G505160 · TK1151
Plastid0.036
Rank 5 · TkA04G505160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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