LXL04_007874 | RubberDandelionOmics

Gene overview

LXL04_007874

Reference: OH-1004 Chr: Chr02 Coordinates: 69658796-69661588 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1268 bp · LXL04_007874|LXL04_007874|OH1004|cDNA

ATGAACAAAAAGGTTGTTGAAAGGTCACCTTCCTCACGAGAGGCTCACTCCAGTAACCCTAAAACGGGCGCCGCCACTCCATTGCAGCTCATATCTTCCTCTCGTTTTCTCCGGTGTTCGGCTGTAATCCACCAGCATTGGCTTCCACTCGCTCGTGTTACCTTTCTCGCGACCAAGAAGCAGCGACATCCCTCCTTGTGTCGTCCTTTACTGTCGAGGAGGAGCATCACCACCGGAGCACCTCTTGTCTCCTTCCCTGC...

CDS

Download CDS FASTA

1161 bp · LXL04_007874|LXL04_007874|OH1004|CDS

ATGAACAAAAAGGTTGTTGAAAGGTCACCTTCCTCACGAGAGGCTCACTCCAGTAACCCTAAAACGGGCGCCGCCACTCCATTGCAGCTCATATCTTCCTCTCGTTTTCTCCGGTGTTCGGCTGTAATCCACCAGCATTGGCTTCCACTCGCTCGTGTTACCTTTCTCGCGACCAAGAAGCAGCGACATCCCTCCTTGTGTCGTCCTTTACTGTCGAGGAGGAGCATCACCACCGGAGCACCTCTTGTCTCCTTCCCTGC...

Protein

Download Protein FASTA

386 aa · LXL04_007874|LXL04_007874|OH1004|PROTEIN

MNKKVVERSPSSREAHSSNPKTGAATPLQLISSSRFLRCSAVIHQHWLPLARVTFLATKKQRHPSLCRPLLSRRSITTGAPLVSFPATCCRREKHTTGAIFCLVRCCVRIRLNEEAAFESAASSSSSSKSIADCDGDRRRTRRRLPDSLFNSTKRSVGLFNNSSSECNRIEASSSFSLLPCPRNRFSSPWNTSDRANSKMRYPAMTFKGHIVYSRTFLEVEKAADELLKFIELKKRDGIRLVIGLDIEWRTYFRKGVKQG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007874`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007874

Location Chr02:69658796-69661588 (+)

Description Similar to WEX: Werner Syndrome-like exonuclease

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g13870`	Exonuclease that digests recessed strands of DNA duplexes in the 3' to 5' direction but hardly single-stranded DNA or blunt-ended duplexes.	Biochemical characterization of an exonuclease from Arabidopsis thaliana reveals similarities to the DNA exonuclease of the human Werner syndrome protein.2003 · DOI: 10.1074/jbc.m303891200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007874 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006139 nucleobase-containing compound metabolic process Biological Process

GO:0006364 rRNA processing Biological Process

GO:0030490 maturation of SSU-rRNA Biological Process

GO:0042274 ribosomal small subunit biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0032040 small-subunit processome Cellular Component

GO:0034388 Pwp2p-containing subcomplex of 90S preribosome Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003723 RNA binding Molecular Function

GO:0008408 3'-5' exonuclease activity Molecular Function

KEGG gene cross-reference

ath:AT4G13870

hsa:134430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.483

Rank 1 · LXL04_007874 · OH-1004

Cytoplasm0.333

Rank 2 · LXL04_007874 · OH-1004

Cell membrane0.157

Rank 3 · LXL04_007874 · OH-1004

Endoplasmic reticulum0.107

Rank 4 · LXL04_007874 · OH-1004

Mitochondrion0.061

Rank 5 · LXL04_007874 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25171.2Beta-prop_WDR36-Utp21_1st300-379 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007874	`PF25171.2`	Beta-prop_WDR36-Utp21_1st	300	379	4.4e-15	56.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84LH3`	Arabidopsis thaliana	3'-5' exonuclease	46.032%	Swiss-Prot	weak database homology

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