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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G501920
Reference: TK1151 Chr: Chr04 Coordinates: 126730205-126735448 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3645 bp · TkA04G501920|TK1151|cDNA

AAGAGAGGGGCGTAAGTGTAATTTACGAATGAAGTCATCACCAAACCTTCTATATTAAAATCCCGCGAACATCCTCCGTCGCTCTCCCCCAGTCTCCCACTGTGTAACAAAGTCTATCTTTCTCTCTCTAGCCCACAAAAGAAAAACGCACGCATTCTCCGCAACACTCCTTACCCGATTCGATCGCCATCAATGGCTGCAGTGAAGGGCTTGTATGGATCGCTAGATGAGTTTTTGAAGCACTGTTCACAGTCAGGTGA...

CDS

Download CDS FASTA

3210 bp · TkA04G501920|TK1151|CDS

ATGGCTGCAGTGAAGGGCTTGTATGGATCGCTAGATGAGTTTTTGAAGCACTGTTCACAGTCAGGTGACTCTGCCTACAGTGCGTTCAGATCACTCTTGGAGCGCCTCGAGAACCCGGAGACCCGAACCGAAGCCAGGATCTTCTTCACGCATCTCCAAAAAAAACTCGAAACCGATGGAGCATCAGAACATTGCCTCGATACTTACCATTTCCAAATCCAAGATATATACCTCGAACGGAATGAAGGTTACCAAAAGAA...

Protein

Download Protein FASTA

1069 aa · TkA04G501920|TK1151|PROTEIN

MAAVKGLYGSLDEFLKHCSQSGDSAYSAFRSLLERLENPETRTEARIFFTHLQKKLETDGASEHCLDTYHFQIQDIYLERNEGYQKKKKLTMMVIPSIFMPEDWSFTFYEGLNRHPDSIFKDKTVAELGCGNGWISIAIAEKWLPLKVYGLDINPRAVKISWINLYLNALDENGQLVYDQEKKTLLDRVEFYESDLLSYCRDNHIELERIVGCIPQILNPNPDAMSKLITENASEEFLHSLSNYCALQGFVEDQFGLGLI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G501920
TK1151 IDTkA04G501920
OH-1004 IDLXL04_016758
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)61.200
Protein coverage (%)TK1151 15.435 / OH-1004 99.363
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G501920
LocationChr04:126730205-126735448 (-)
DescriptionSimilar to MMT1: Methionine S-methyltransferase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g49810 Catalyzes the S-methylmethionine (SMM) biosynthesis from adenosyl-L-homocysteine (AdoMet) and methionine. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016758 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001887 selenium compound metabolic process Biological Process
GO:0032259 methylation Biological Process
GO:0046500 S-adenosylmethionine metabolic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009536 plastid Cellular Component
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity Molecular Function
GO:0030170 pyridoxal phosphate binding Molecular Function
GO:0030732 methionine S-methyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT5G49810
zma:541786
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.580
Rank 1 · TkA04G501920 · TK1151
Nucleus0.286
Rank 2 · TkA04G501920 · TK1151
Mitochondrion0.128
Rank 3 · TkA04G501920 · TK1151
Cell membrane0.088
Rank 4 · TkA04G501920 · TK1151
Endoplasmic reticulum0.062
Rank 5 · TkA04G501920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07669Eco57I74-100 aa
PF13489Methyltransf_23112-168 aa
PF05175MTS121-178 aa
PF13847Methyltransf_31121-163 aa
PF06325PrmA121-181 aa
PF02475TRM5-TYW2_MTfase121-173 aa
PF13649Methyltransf_25125-160 aa
PF08242Methyltransf_12127-158 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G501920PF07669Eco57I741000.06314.1
TkA04G501920PF13489Methyltransf_231121680.0003820.9
TkA04G501920PF05175MTS1211785.8e-0626.7
TkA04G501920PF13847Methyltransf_311211639e-0626.2
TkA04G501920PF06325PrmA1211811.2e-0525.7
TkA04G501920PF02475TRM5-TYW2_MTfase1211730.0003921.1
TkA04G501920PF13649Methyltransf_251251600.0004421.6
TkA04G501920PF08242Methyltransf_121271580.01217.0
TkA04G501920PF29244Methyltransf_ANTKMT1271730.01716.3
TkA04G501920PF08241Methyltransf_111271620.02116.1
TkA04G501920PF07669Eco57I1481970.06314.1
TkA04G501920PF00155Aminotran_1_24164734.3e-1453.2
TkA04G501920PF31158AICE_RepA_C4584790.2112.4
TkA04G501920PF13489Methyltransf_235035320.0003820.9
TkA04G501920PF13847Methyltransf_315055359e-0626.2
TkA04G501920PF30366YehQ_4HB5245570.113.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LTB2Arabidopsis thalianasp|Q9LTB2|MMT1_ARATH Methionine S-methyltransferase68.100%Swiss-ProtHigh

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