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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G500420
Reference: TK1151 Chr: Chr04 Coordinates: 126354245-126357590 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1692 bp · TkA04G500420|TK1151|cDNA

ATGCTATCAAGTCTAGCTGGCAAAATCTACCACCTGATTTGGAGCGGGTCGGATCCCTGTGGAAGTATTTGGGAAGGGATTAAATGTACAAACTCACGTGTAACCTCCTTAGTGGTGGCAGGCATGGGGGTGAGAACTAACAGCATTGGAGACATTCCATCACTTTCCCAGTTGGAATATTTAGATCTTTCTAACAACAAAGGGATCAAAGCCCCTCTTCCACCAACAATTCAGAATTTGAAGAACTTGACAACATTAAT...

CDS

Download CDS FASTA

1692 bp · TkA04G500420|TK1151|CDS

ATGCTATCAAGTCTAGCTGGCAAAATCTACCACCTGATTTGGAGCGGGTCGGATCCCTGTGGAAGTATTTGGGAAGGGATTAAATGTACAAACTCACGTGTAACCTCCTTAGTGGTGGCAGGCATGGGGGTGAGAACTAACAGCATTGGAGACATTCCATCACTTTCCCAGTTGGAATATTTAGATCTTTCTAACAACAAAGGGATCAAAGCCCCTCTTCCACCAACAATTCAGAATTTGAAGAACTTGACAACATTAAT...

Protein

Download Protein FASTA

563 aa · TkA04G500420|TK1151|PROTEIN

MLSSLAGKIYHLIWSGSDPCGSIWEGIKCTNSRVTSLVVAGMGVRTNSIGDIPSLSQLEYLDLSNNKGIKAPLPPTIQNLKNLTTLILVGCNFFGPIPDSIGSLEKLVFLGLNHNSFTGTIPRSIGKLANLTWLDITDNQLFGRIPVSNGTDPGLDMLVNTKHFHFANNQLSGLIPYRLFSSSMTLIHVLFNNNQLSGKIPSSIGLVDTLEAIRLDSNSLDGDLHRNITNLKSVSEFYLANNNLSGPIPDLIGMNSLYYV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G500420
TK1151 IDTkA04G500420
OH-1004 IDLXL04_039047
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.500
Protein coverage (%)TK1151 96.092 / OH-1004 57.068
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G500420
LocationChr04:126354245-126357590 (-)
DescriptionSimilar to At5g49770: Probable leucine-rich repeat receptor-like protein kinase At5g49770
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g49760 Leucine-rich repeat receptor protein kinase that acts as sensor of extracellular hydrogen peroxide.
Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis.2020 · DOI: 10.1038/s41586-020-2032-3
At5g49770 Probable leucine-rich repeat receptor-like protein kinase At5g49770. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039047 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009593 detection of chemical stimulus Biological Process
GO:0045088 regulation of innate immune response Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0004675 transmembrane receptor protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G06840
ath:AT5G37450
ath:AT5G49760
ath:AT5G49770
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.643
Rank 1 · TkA04G500420 · TK1151
Cytoplasm0.125
Rank 2 · TkA04G500420 · TK1151
Endoplasmic reticulum0.101
Rank 3 · TkA04G500420 · TK1151
Extracellular0.096
Rank 4 · TkA04G500420 · TK1151
Lysosome / Vacuole0.081
Rank 5 · TkA04G500420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25013LRR_Zer-131-80 aa
PF23598LRR_1444-137 aa
PF12799LRR_447-67 aa
PF24758LRR_At5g5637053-116 aa
PF13855LRR_854-92 aa
PF25013LRR_Zer-154-142 aa
PF25019LRR_R13L1-DRL2156-113 aa
PF00560LRR_157-80 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G500420PF25013LRR_Zer-131800.0001922.3
TkA04G500420PF23598LRR_14441378.6e-1451.8
TkA04G500420PF12799LRR_447672e-1144.4
TkA04G500420PF24758LRR_At5g56370531160.008516.5
TkA04G500420PF13855LRR_854921.7e-1144.4
TkA04G500420PF25013LRR_Zer-1541420.0001922.3
TkA04G500420PF25019LRR_R13L1-DRL21561130.00517.5
TkA04G500420PF00560LRR_157801.3e-1863.8
TkA04G500420PF12799LRR_457982e-1144.4
TkA04G500420PF00560LRR_1821041.3e-1863.8
TkA04G500420PF13855LRR_8821411.7e-1144.4
TkA04G500420PF00560LRR_11061281.3e-1863.8
TkA04G500420PF12799LRR_41061412e-1144.4
TkA04G500420PF00560LRR_11301471.3e-1863.8
TkA04G500420PF13855LRR_81591771.7e-1144.4
TkA04G500420PF00560LRR_11611781.3e-1863.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GZ99Arabidopsis thalianasp|Q8GZ99|HPCA1_ARATH Leucine-rich repeat receptor protein kinase HPCA147.900%Swiss-ProtMedium
Q9LT96Arabidopsis thalianasp|Q9LT96|Y5977_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g4977040.600%Swiss-ProtMedium

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