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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G483510
Reference: TK1151 Chr: Chr04 Coordinates: 122160941-122166165 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2694 bp · TkA04G483510|TK1151|cDNA

ATTTAATGGTCTTCGTGTCAAGACACCACCAGTTAGTTTTCTAGAATGGAATGGAATAACAACAATATTTTTCTCAGCTTGGCAGCACTCCTCCGCACTTACCATCTTCGCCCCAAATTCAATTCAAATCTCACTTTTTTCTTAAATTACTGCTTAATTCACACCTAACGCCTTCTTGGTGTTGTGTTCCTCTCCGATATCGATATCGATCTGATCTGATCTGATCTGATCTGATCGATCAACATCAAGAAAAATGGCGA...

CDS

Download CDS FASTA

2031 bp · TkA04G483510|TK1151|CDS

ATGGCGATGGCGAGGGCAAGCTCTGGCCTCGCATACCCGGATCGTTTTTACGCCGCTGCTACTTACGCCGGCTTCGGCGGCTCTCCCACTTCATCTTCTAAAGGGGTCACATCCAAATTCTCAAATGACGTCGCTCTTTTGCTTTACGCCTTGTATCAACAGGCAACTGTTGGAGCTTGTAGCGTACCAAAACCAAGAGGATGGAGTCCTGTGGAACAAAGCAAATGGACAAGTTGGAATGGTCTTGGAAACATGGCTTC...

Protein

Download Protein FASTA

676 aa · TkA04G483510|TK1151|PROTEIN

MAMARASSGLAYPDRFYAAATYAGFGGSPTSSSKGVTSKFSNDVALLLYALYQQATVGACSVPKPRGWSPVEQSKWTSWNGLGNMASIEAMRLFVKILEEEDPGWYSRAANFISEPVIDVEMNHNVKMELPSKNEISLPETKTIPHENGNSVETHDKDVMVEGLSSVVVYDQWVDPPVSGQRPKPRYEHAAAVIDDKMYIFGGNHNGRYLNDLQTLDLRNWTWSKVEVKPNSEAPVTVTPCAGHSLIPWEGNKLISIAGH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G483510
TK1151 IDTkA04G483510
OH-1004 IDLXL04_038939
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G483510
LocationChr04:122160941-122166165 (-)
DescriptionSimilar to ACBP4: Acyl-CoA-binding domain-containing protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g05420 Binds medium- and long-chain acyl-CoA esters with very high affinity.
ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.2004 · DOI: 10.1007/s11103-004-0642-z
Arabidopsis acyl-CoA-binding proteins ACBP4 and ACBP5 are subcellularly localized to the cytosol and ACBP4 depletion affects membrane lipid composition.2008 · DOI: 10.1007/s11103-008-9392-7
At5g27630 Binds medium- and long-chain acyl-CoA esters with very high affinity.
ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.2004 · DOI: 10.1007/s11103-004-0642-z

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0835600 Binds medium- and long-chain acyl-CoA esters with high affinity.
The rice acyl-CoA-binding protein gene family: phylogeny, expression and functional analysis.2011 · DOI: 10.1111/j.1469-8137.2010.03546.x
Subcellular localization of rice acyl-CoA-binding proteins (ACBPs) indicates that OsACBP6::GFP is targeted to the peroxisomes.2014 · DOI: 10.1111/nph.12809
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038939 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001666 response to hypoxia Biological Process
GO:0006869 lipid transport Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0007165 signal transduction Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0000326 protein storage vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005777 peroxisome Cellular Component
KEGG gene cross-reference
ath:AT3G05420
ath:AT5G27630
dosa:Os03g0835600
dosa:Os03g0835800
osa:4334700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.419
Rank 1 · TkA04G483510 · TK1151
Nucleus0.253
Rank 2 · TkA04G483510 · TK1151
Golgi apparatus0.183
Rank 3 · TkA04G483510 · TK1151
Cell membrane0.140
Rank 4 · TkA04G483510 · TK1151
Lysosome / Vacuole0.100
Rank 5 · TkA04G483510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13415Beta-prop_FBX4225-55 aa
PF00887ACBP35-97 aa
PF13415Beta-prop_FBX42155-262 aa
PF01344Kelch_1164-171 aa
PF24681Kelch_KLHDC2_KLHL20_DRC7171-260 aa
PF24981Beta-prop_ATRN-LZTR1171-298 aa
PF13854Kelch_HCF172-203 aa
PF13418Beta-prop_TYW4181-369 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G483510PF13415Beta-prop_FBX4225554.5e-72242.7
TkA04G483510PF00887ACBP35971.1e-1661.5
TkA04G483510PF13415Beta-prop_FBX421552624.5e-72242.7
TkA04G483510PF01344Kelch_11641711.2e-29102.2
TkA04G483510PF24681Kelch_KLHDC2_KLHL20_DRC71712601.4e-77260.6
TkA04G483510PF24981Beta-prop_ATRN-LZTR11712983.5e-45155.2
TkA04G483510PF13854Kelch_HCF1722031.2e-34120.8
TkA04G483510PF13418Beta-prop_TYW41813696.2e-1350.0
TkA04G483510PF25210Kelch_FKB951832345e-1246.7
TkA04G483510PF13964Beta-prop_Calicin1832448.8e-0625.6
TkA04G483510PF01344Kelch_11852261.2e-29102.2
TkA04G483510PF07646Kelch_21852301.8e-2381.9
TkA04G483510PF24996NANM1852296e-1142.5
TkA04G483510PF25852DUF6242_C1882440.0001722.0
TkA04G483510PF13415Beta-prop_FBX421973634.5e-72242.7
TkA04G483510PF13854Kelch_HCF2073621.2e-34120.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9MA55Arabidopsis thalianasp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 469.000%Swiss-ProtHigh
Q8RWD9Arabidopsis thalianasp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 563.300%Swiss-ProtHigh
Q75LJ4Oryza sativa subsp. japonicasp|Q75LJ4|ACBP6_ORYSJ Acyl-CoA-binding domain-containing protein 657.400%Swiss-ProtHigh

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